RnoINT0048633 @ rn6
Intron Retention
Gene
ENSRNOG00000026914 | Dnah1
Description
dynein, axonemal, heavy chain 1 [Source:RGD Symbol;Acc:621795]
Coordinates
chr16:7346632-7347439:-
Coord C1 exon
chr16:7347088-7347439
Coord A exon
chr16:7346867-7347087
Coord C2 exon
chr16:7346632-7346866
Length
221 bp
Sequences
Splice sites
5' ss Seq
AAGGTCTGA
5' ss Score
4.3
3' ss Seq
TGTCTGTGTGCCCACCACAGGTA
3' ss Score
9.25
Exon sequences
Seq C1 exon
GTACAACAAGCTCCTAATGGTGATCACACAGACACTCAGTGACATGCTCAAGGCAATAAAGGGGCTAGTGGTAATGTCCCTGGAGCTAGAGCTGATGTCCACCAGCCTGTACAACAACGCTGTGCCTGAGCTCTGGAAAAGCAAGGCCTACCCGTCGCTCAAGCCACTGGCTTCCTGGATCATGGACCTGCTGCAGCGCCTGAATTTCCTGCATTCCTGGATCAAAAATGGCATCCCATCTGTCTTCTGGATCAGTGGCTTCTTCTTCCCTCAGGCTTTCCTGACAGGCACTCTACAAAACTTTGCCCGAAAGTTCGTCATCTCTATCGACACTATCACCTTTGATTTCAAG
Seq A exon
GTCTGAAGGAGGGCGGTAGGGAGGGGGGTTAAAGGTTGGAGTAATCTGAGTAGGAGGTGAAAAGACCCAGGCCAACAGCCCCAGGGGAAATCAGAGGGGCTGGTAACAGACTGTAATGGCAGATAGATGATGGGCAGCCTGCGGCTTTCAGGACAGAGACCTGTCTCCTGATGCAGATCCGCATCCTGTTTCCAATGTGGGTGTCTGTGTGCCCACCACAG
Seq C2 exon
GTACTGTCCTACGCATCATCAGAGATTGCGGAAAGGCCCAGTACGGGGTGCTATATCTACGGACTGTTCCTGGAAGGCGCTCGCTGGGACCCGTTCGATTTCCAGCTGGCTGAGTCCCGGCCCAAAGAGCTGTACACAGAGATGGCTGTTATCTGGCTTTTGCCAGTAGCTAACCGAAAGGTCCAGAACCAGGACTTCTACCTGTGCCCCATCTACAAGACTCTGACCCGTGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000026914:ENSRNOT00000035009:77
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(16.5=100)
A:
NA
C2:
PF0302810=Dynein_heavy=FE(11.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCCTGGATCATGGACCTGCT
R:
GGACTCAGCCAGCTGGAAATC
Band lengths:
298-519
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]