GgaINT0020568 @ galGal4
Intron Retention
Gene
ENSGALG00000001535 | STAB1
Description
stabilin 1 [Source:HGNC Symbol;Acc:HGNC:18628]
Coordinates
chr12:594091-595276:+
Coord C1 exon
chr12:594091-594176
Coord A exon
chr12:594177-595206
Coord C2 exon
chr12:595207-595276
Length
1030 bp
Sequences
Splice sites
5' ss Seq
AAGGTCAGT
5' ss Score
8.68
3' ss Seq
ACATTATGGGCCCCTTCTAGGAG
3' ss Score
7.06
Exon sequences
Seq C1 exon
AATGTCCAGGAGGCTCTGAAAATCCCTGCAGTAGTCATGGAACGTGTTTGGATGGTATACAGCGAAATGGAACCTGCATCTGCAAG
Seq A exon
GTCAGTGAATAGGTTATTCTGAGGGGGTTTGTCACGTTTGAGGGAGCAGAGTGCTGTCTGTGCCACAGCCTTTGATGAAGGCCAGCCTTCTGCCTGGAGGGTCGTTAGCAGATTCTTTTATTCCAACATCAGTGTCTGTGGTTCAACTGAAGGGCCAGTGCGGTCTGCAGCAGCACTAGGGTTCTGTTAGTGAGGTTATGGCATTAGGAAGGATCTCTAGGAAGAAATTAAGAAAGAATTGCATGAATTTAACCCTCTGATCAGTTGAAATAATCAGTGTCTGCCTGTGGCTGCGAGAAGCTCTGAGATCCTCCTGAAGAGCCACACGTACCAGAATTGAAAGATACACTTCCCAAGGATGTACTGCACCTTGGCAGGCAGTTCCTCCCCCTCTCCAGATAAGCAAGAAAGACTAAAAATAAAGGGTTTTTTGTTTTTTTTTTGGTGTAGTCTTTTTTTTTTTTTTTTTTTCCATTACAGTTCTAGTCTTCATACAACAGGAGCACGAACAACTGCTGCACATGTGAATCATATAAAGCAATGTTTCTAATATTGGCTGAACAGATTTGAAACTTCCCCCTTTTTACAACATCCTTAATTGATGGCATTGTGAAGGGACAAGCAAAAATCTCACCTCTCAAGTCCCACTTTGAGAAAAGCTGATTTTGGACTTCTATATCAATTAAAATACATAGTTAAGGTCCTCAAGCCCTATAAAATCAATGCCTAATGTCCCATGAGCGTCAGTGAATTCCTTTTCCAGAGAGATATCACAAACCAGCTGATATGTTCTTGTCTATGATCCGGGGATTGTTTCCTTGGAGCCCATCTGAGTTCTGCTGGCATTTTGCACACCCTCTGGGTGTGGGTTTACTCCTCTGTGTGAGGCTGTTGGCAACTACTCCAGCACTGCAGGCCTTCAGCTGCCAGAAGACAACAGAAATGGGGAGATACTTTGAGCTATGGCAACGTTTGCAGCAACACAGTGGTGTAGAAAAATAACGTCTGGCACATTATGGGCCCCTTCTAG
Seq C2 exon
GAGCAGTACAGTGGTTTTGCCTGCCAGAACTGTCGAGATGGAAACCGTTTTGGCCCAGACTGCCAGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001535:ENSGALT00000002333:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0000822=EGF=PU(79.3=79.3)
A:
NA
C2:
PF0000822=EGF=PD(13.8=16.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]