MmuINT0153422 @ mm9
Intron Retention
Gene
ENSMUSG00000035459 | Stab2
Description
stabilin 2 [Source:MGI Symbol;Acc:MGI:2178743]
Coordinates
chr10:86442676-86443921:-
Coord C1 exon
chr10:86443836-86443921
Coord A exon
chr10:86442746-86443835
Coord C2 exon
chr10:86442676-86442745
Length
1090 bp
Sequences
Splice sites
5' ss Seq
CGGGTAAGT
5' ss Score
10.75
3' ss Seq
CATCCACCTGTGTTTTGCAGGCA
3' ss Score
9.49
Exon sequences
Seq C1 exon
AGTGTCCAGGAGGAGCAAGGGCACCGTGTGGTGGCAGGGGTGTTTGTGATGAAGGCATGGAAGGAACCGGAAGCTGCTCCTGCCGG
Seq A exon
GTAAGTTCCGAGATCTGCTCCACCCAGAAGTGCTGCCTCCCACTTCCCCACTGTTGATTTACCTTAATGACAAGCCCACACAAGGAGAAGCCTCTAAGAGTAACACGATTAAAAGATGAATTCTTGATGTGCAACAAAATCATCTCTCATTCTTATACCCACCTGTAAAGCCTGAAGAAAGATCAGAATGACCCTCTTTGAAGACATAAAATGGGGTCACATAGCTAAAGCTACCTTATGAATATGTTTAAGGACATAAGCTGTCCCTTCTTGCTGTTGTTAGTAATCATCTCTACTACTAGACTACCTTTGGGGTGGTGCTCTCCACCCTGGGCCAACCAGGGGCATGGGGCCATTGAAGAAATTCTTTATCTAACAAAAAGGACTCCTGTCAATTTCAAACTGTAGAGGAATTAAACACAGGTCCTTCTGACGGGACTCGAGTCCAGCTACCTTCACAACAGAACTGGAAGTGGTTTTGCTTCTTCCTTAGGTGAAATTGTCGTGGGTCTGTGGGCTCTTACTATTTATATCATTGGGTCGACAGACAGCTTCCTCTATAGGGCTCTAGACTCTTAGCAAAAGGCAGGGGGGGGGGGGCGGTGAGACAGACTACCTTGGTGACAGTGGGAATGGGGGTGTCTCTGGCTCTTTAGCCTGTTCTTGGGACCCTTTTTCTCCTACTGGGAGCCTCACCCAGCTTTGATATGGAGATTTATGCCTAGTCTTACTGTATCTTGTTATGCCATGTTTGGTTGCTATCACTGGCAAGGCCTGCTCTTTCCTGAAGGGAAACAGAGGAGCGGTGGATCTGGGGAGAGGGAGGTTAGGGAGTGAGTGGAAGAAGGGAAACTGGTCAAGATATATTTTTAAAAATTTGATTAAGTAAAATTAAAAAACAAAATTAATGAGTGCATTATGACATACATGAAGACTTCAAGGGACTCAGGAGAGAAAGGCCCAGAGGAAAGACATATTTGAGAAGCAAACACTGGCCAGATGGCCAGTGAGTTGCCCCGAGGCTTTCCAGGTAGCATGGGAGTCACCTGGGATGACCTTGAGTCTGACGTCATCCACCTGTGTTTTGCAG
Seq C2 exon
GCAGGCTTTCGTGGAACAGCCTGTGAGAACTGTGCTGCTGAAGACGTTTTTGGTCCCAATTGTTCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000035459-Stab2:NM_138673:4
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF079748=EGF_2=PU(75.0=93.1)
A:
NA
C2:
PF079748=EGF_2=PD(19.4=29.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
Other AS DBs: