HsaINT0160056 @ hg38
Intron Retention
Gene
ENSG00000136011 | STAB2
Description
stabilin 2 [Source:HGNC Symbol;Acc:HGNC:18629]
Coordinates
chr12:103620468-103622111:+
Coord C1 exon
chr12:103620468-103620553
Coord A exon
chr12:103620554-103622041
Coord C2 exon
chr12:103622042-103622111
Length
1488 bp
Sequences
Splice sites
5' ss Seq
CAAGTAAGT
5' ss Score
10.08
3' ss Seq
CCACCTGGGGTGTTTTGCAGGAA
3' ss Score
8.71
Exon sequences
Seq C1 exon
AGTGCCCAGGTGGAGCGGGGTCACCCTGCAATGGCAGAGGCAGTTGTGCTGAAGGCATGGAAGGAAATGGAACCTGCTCCTGCCAA
Seq A exon
GTAAGTTCAAAAATGTGTTCTTCCTTTCCTGGTTTCTGCTCCCCATCTTCTTACCTGTTGATCCTCCTTAAACACACACACACACACACACACACACACACGTGCACACACACATATACAGCGAAGTTCTTAAGCAGTGAAGGTATTAATTTTTTAAAAATGTGCAATTTGCAACAAAATGACCATTTATAGCCTGGGGGCCTTTAGGAGAGTCAATTAACTGCTCAGTCTTAAGCATATCCACTTGTAAAAATGGGTTTGAGGCTGGGAGCAGTGGCTTACGCCTGGAATCCCAGCACTTTAGGAGGCCGAGTGGGGGAGGATCACGAGGTCAGGAGATCGAGACCATCCTAGCCAGCATGGTGAAACCCCGTCTCCACTAAAAATACAAAAATTAGCTGGGTGTGGTGGTGGGCGCCTATAGTCCCAGCTACTCAGGAGGCTGAGGCAGGAGAATTGCTTGAACCCAGGAGGCAGAGGTTGCAGTGAGCTGAGATTGTGCCATTGCACTCCAGTCTGGGTGACAAGAGCAAGACTCTGTCCACCCCCACCCAAAAAAAAAAGTTTGAAACAGTATCTATGTAATAACATTTGTTGAAAAAGTAAAATGAGGCCATATATGTGAAAATACTTTATGACACTATATAGGACTATAGAAATTGCTGTCATTGTTAATATTAATAATCACTATTAGCAGACAAACCTTATGGTGCTATCCTCTGCATCCTTTGTGAACCGTTAGGCTTACCGGTTCAAGATTTTCTTTTACCAGTTGAAGAATTTCTTCGTTATCTCATGAAAGTGACTTTTTGCACATTTCAAGCCCTGGGGGATTTAAATACAAGGAAATCCTTCTGAAAAGGATTGAGCTCAACTGTCTTCAGAAATGCAAAACTGAGGTTGGGCAGGTGGCTCACGCCTGTAATCCCAGTACTTTGGGAGGCCAAGGTGAGCAGATCACTTGAGGCCAGGAGTTCGAGACCAACCTGGCCAACATGGTGAAACCTGTCTCTACTAAAAATACAAAAATTATCCGGGTGTGGTGGTGTGCACCTGTAATCCCAGCTACTCGGGAGGCTGAAGCAGGAGAACCTGGGAGGCGGAGGTTTCAGTGAGCCGAGATCGTGCCACTGCACTTCAGCCTGGGTGACGGAGCGAGACTCAGTCTCAAAACAAAAATGCAAAACTGAAAGCATTTTCCTTTCCCCCTTGGGCAAAGTTGGGATATGGCTGCTAGCACTTGCTATCTATTTATATCTTTGGACTGACAAAGCAGCTTTCTCCTGCAGAGCTTCAGACCCTTAGTACAAAATGACATGGGGATTAATGCATGCAATGATAACACAAATAAACAGAAAGAAGAAGCTCCAGGATAGGCACAGAGGGAAAATATATTTGAAAAACAAATGCTGAGTTGGAAATCCAAGGCCTTCCTTGGTACCATGGGTCACCTTGGGTCTAATGTCAACCACCTGGGGTGTTTTGCAG
Seq C2 exon
GAAGGGTTTGGTGGAACAGCCTGTGAAACCTGTGCTGACGACAACTTATTTGGACCCAGCTGTTCATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000136011:ENST00000388887:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0005319=Laminin_EGF=PU(46.8=75.9)
A:
NA
C2:
PF0005319=Laminin_EGF=FE(48.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains