BtaINT0141853 @ bosTau6
Intron Retention
Gene
ENSBTAG00000006010 | STAB2
Description
Bos taurus stabilin 2 (STAB2), mRNA. [Source:RefSeq mRNA;Acc:NM_001206679]
Coordinates
chr5:67633350-67634300:+
Coord C1 exon
chr5:67633350-67633435
Coord A exon
chr5:67633436-67634230
Coord C2 exon
chr5:67634231-67634300
Length
795 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
3' ss Seq
TCCCCTCTGGTGTCCTGCAGGAA
3' ss Score
11.93
Exon sequences
Seq C1 exon
AGTGCCCGGGAGGAGCAAGGTCCCCCTGCAGTGGCCGGGGCCGTTGTGCTGAAGGCATGGAAGGAAATGGAAGCTGCTTATGCCAG
Seq A exon
GTAAGTTCAAAACAGTATTCTCCTCCTTCCTGACTCTGCTGTCTCCTTACCTGTTGTCCCTCTGTAAACACACACTGGGTGAAGACTCTAAGAAGCAGCGATGTTAGTGGGGGTGAGTGGGGGAAGCGTATGCATGTTACAGGCTGGGGGACCTTAGAGCAAGTCAGTTAACTGCTCAGCCTTAAGTGAATCCATCTGTAAAATGAATTTAATAATAATACTGAAGCAATTATACTTGTTGAAAAACTGAGATGAGAACAATGCAGGGCTCTAGAAATTGTGTCATTGTTACCCTTCAAAGTCACCACTATTGGCAGACTAGTCTTTGAAGCTGTACTCAGACCCATGGTGAGCGCTTGGTCTGCCAATTGAGGAATTTCTTTGCTATCCCATGAAAGGGACTTTTTGCAAGCTTCAAGCCTTACACTATGGGAATACAAAGAAACCCTCTGAAAAGAATTGAGCTCAACTGTCTTTAGAATTGCAAAACTGAGAATGTATTCATTTCACCCTTGGGTGGATTTAGGATGTGGCCATCAGTGCTGATTCTCTAGTTATACCTTTGAAGCAACTTTCTTCAGAAGAGCTCCAGATTCTTAGCTCCAGACTGATTCAAGGAATGAATGTACAAATTATAACACAAAAAAAGAGCAAAGAAGAAAGAGAGTTTCAGGACAGGCACAGAGGGAAGATCCATTTGAGAAATGAATGCTGACCGGAGAGTCAGAAATCTATGGTCTTCGTGGGTAACACAGATTGCTTGGGTCTAACACCCTCCCCTCTGGTGTCCTGCAG
Seq C2 exon
GAAGGATTCAGTGGAACAGCCTGTGAAATCTGCGCTGCTGACAACGTATTTGGGCCCAACTGTTCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006010:ENSBTAT00000007896:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]