GgaINT0112608 @ galGal3
Intron Retention
Gene
ENSGALG00000012751 | STAB2
Description
NA
Coordinates
chr1:56888768-56890118:-
Coord C1 exon
chr1:56890033-56890118
Coord A exon
chr1:56888838-56890032
Coord C2 exon
chr1:56888768-56888837
Length
1195 bp
Sequences
Splice sites
5' ss Seq
CAGGTACAG
5' ss Score
8.68
3' ss Seq
TTTCCATTTTGTAATTCCAGAAA
3' ss Score
7.03
Exon sequences
Seq C1 exon
AATGTCCAGGAGGAGCTGCATCGCCATGCAATGGGAGGGGACACTGTTCCCAGGGCTTGAATGGAAATGGAACATGCACTTGTCAG
Seq A exon
GTACAGTCTTTCCCTCAGAGTAAAAATGTAACAGCAGCCTGTAAGTACAGCTAAGAATAACAGTGAGTACTATTATGGAAAATAATACATACTACATTGTATTGTAAAGTAATTCAGAAATAGCAGATGTAGACTACATGGAGTTCATTTTGCTTAGTTTGCATTAAACTTGATAGCATTATTACTAGAGGCCTAGACAGGTTCAGGAGAAATTATTTAAAAACTCTTCTACCTTTAGGCTCACAGGAGACCTTATCACTCTTTACAATGATCTGAAAGGAGATTGTAGAGAGGCGGCGGGTGGTCTCTTCTCCCATATTAACAACAATAGGGCAAGAGGGAATGGACTTAAATTGCACCAGAGGAAGTTCAGGTTGGATATTAGAAAGGATTTCCTCTCAGAAGGAATGGTGCTGCATTGGCACAGGCTGCCCAGGGAGGTGGTGCAGTCACCGTCCCTGGAGGTGTTCCAGAGCCCTGTGGATGTGGCACTGAGGGACGTGGTCAGTGGGGATGGTGGGGTTGGGGTGGTGGTTGGACTAGGTTATCTTAGAGATCTTTTCCAACATGATTCTATGATTGTGTGTATCTTGAAGCATGTGGTTTGAGTTCTTCTATTTTTTATGGTGTGCTGCTACTTATGACTTTTTGTCTTAATTAGAAAACACGTGTCTTTGGGACTGTAGTCTCAGTATTACGTTTCTTTGTTGAGAGTGTAATCTGCAGCACTTAATAACTTCAGCCAAAAATATTTTAAAAGAGAAACACACTTCACACTTTTCTACTTCACCCATTACTGGTTAATCTTTCTTTTACACCAAAAACACATCTTTTGGGGACATATGAAAAGTAGACAGAGGGAAAAATAGTCAGGAAGTACAATTCCATGATTATAAGAATGATTTTGGTGCTAGGCTTGATTATTGTTCTCAACTGTTAACTTGAGAAGACCAAAAAAAGCAGAGAAAAATTATTCAAAAGACAACACTTTCTTGAACAACACAGTCAATCAGTTCTGATTTGCTGACTGATTTATTTTCTTTTTCCTTTATAGAGATATGGGTGTGGTTTAGTTGTTTTTGTGGTTGTTTGTTTGCTTTTTGTGGTTAAAGATGTTGCTTTCAGGTTGATAACCATATATCTACCCGTATATAGATGACAGATTTAAGTATTAATTTCCATTTTGTAATTCCAG
Seq C2 exon
AAAGGATTTGCTGGGACAGCCTGTGAAAAATGTGCTGAAGATCATTTATTTGGTCCTCAGTGCACATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012751:ENSGALT00000020806:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]