GgaINT0020582 @ galGal3
Intron Retention
Gene
ENSGALG00000001535 | STAB1
Description
NA
Coordinates
chr12:609432-610449:+
Coord C1 exon
chr12:609432-609590
Coord A exon
chr12:609591-610386
Coord C2 exon
chr12:610387-610449
Length
796 bp
Sequences
Splice sites
5' ss Seq
ACTGTAAGT
5' ss Score
8.59
3' ss Seq
CACTCTTGTTTTCTTAACAGGGC
3' ss Score
10.51
Exon sequences
Seq C1 exon
GGAAGAATTCTGATGGACGACTCAGAGATCCCCTTAAACCTGAGAAACATTGTGGCATCAAATGGTATTATTCATACCGTGGACGGCATCTTCATCCCTCCTTCAATAATTCCCATTTTTCCTCACAGATGTAATGAAGAACAACACAAAATTGTGACT
Seq A exon
GTAAGTCAACTTGGCCCATTCTCATCTTAGCCATTGCTGTAGAGCCCACAGTCACCTGGAGGAATGGAAGCAGAATGTGTAAATTACATCTGGGCAATGTCACTTTGCCCTGCTTTGTTGGCAATCGGCTGTTTTTGTTTAGTCTTTCTTTCCTTACACTCGTCCTACCTTTGCTTCAGAAAGATGTTTGCCTTTTCGTAATGCCTTGCATTCTCTTCTTCATACCAGAGTTACTAATTCAGCTGAGAATGCTTTGTTCCCATTACCATTACCATTGGCCTCCTTTTAGTGTGTATGGGGAACAGTCATTTGGTAGTGGAAGCTGCAAACAGTGTACATACAGAGTTTTGTATACCTTACTTTAGGTACGTGTTCCCCAAATTGATGATTGGTATGTTACTACAGAAAGAGAATACAGCTCTAGGGAAACAGGTGTCTGATTCGGAGCAACATGAATTATCTGAGCTGACCAGAGAATCGATATCACCTTGAGGTTGCCACGTGGATGCCCAAAGTGTTTTACTGCATAGCTGTGTGTCTCATGGCTGATAGACTCACAGGTCTATCAGATAGACCGTATAGACAGAGTCTATCCTGAAGTCAGATGCAAACATCTCCTCGTAACTATAGAGCCATTTGATTTAAGCAATAAACTTACCCTGTTTCGGATTGTGGAAACTCCCTCCTAAGAATGCTTCTGACACAAGTGATGTTTTGGATATACAGTGGGAACAGTAGCTCTATGTCATTCTTGGCATGGGGGAGATTAAGTTTTCCACTCTTGTTTTCTTAACAG
Seq C2 exon
GGCTCTTGTGTGGACTGTGAGGCCATCAACAGCAGTGTTTGCCCACCTGGCAGCAGAGAAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001535:ENSGALT00000002333:19
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0246917=Fasciclin=PD(25.2=60.4)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAAGAATTCTGATGGACGACTCA
R:
CATTTCTCTGCTGCCAGGTGG
Band lengths:
222-1018
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]