HsaINT0159964 @ hg38
Intron Retention
Gene
ENSG00000010327 | STAB1
Description
stabilin 1 [Source:HGNC Symbol;Acc:HGNC:18628]
Coordinates
chr3:52506692-52507675:+
Coord C1 exon
chr3:52506692-52506850
Coord A exon
chr3:52506851-52507612
Coord C2 exon
chr3:52507613-52507675
Length
762 bp
Sequences
Splice sites
5' ss Seq
GCGGTGAGC
5' ss Score
8.02
3' ss Seq
CCTGCCCCTGCCCTGCCCAGGGC
3' ss Score
8.81
Exon sequences
Seq C1 exon
GGGCGCATCCTGCTGGGACCCGAGGGGGTCCCGCTGCAGAGGGTAGACGTGATGGCCGCCAATGGTGTGATCCACATGCTGGACGGCATCCTGCTGCCCCCGACCATCCTGCCCATCCTGCCCAAGCACTGCAGCGAGGAGCAGCACAAGATTGTGGCG
Seq A exon
GTGAGCCTCGCCTGCACGGCCAGGGCCCTACTCACTAACCCCTGTCAGCGCTGGAGCGGCAATCCTCTTCCCAGGGAGAGGCGCTAAGTCAGGGCTGGGCTGACGCCGGCTCTGAGGCCCTGCTGGCAGACTCCCAAGGACCCACCTGTGCTTCCCCCACGCTCACCCTCACCAGGACTATGATTCCATCTTTGAGATTTGTTTTGTTTTTTGAGGTAGGGTCTTGCTCTGTCGCCTAGGCTGGAGTGCAGTGGCACAATCCCAACTCACTGTAGCCTCCGCATCCTGGGTTCAAGCGATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGATTACAGGTGTCCGCCAACATGCCTGGCTAATTTTTGTATTTTTAGTAGAGATGGGATTTCACCATGTTGGCCAGGCTGGTTTCAAACCTCTGACCTCAGGTGATCCGCCCACCTCGGCCTCCCAAAGTGCTGGGATTACAGGCATGAGCCACTGAGCCTGGCCTGAGATAACTCTTGCATCCTCCACCGCTCCATCCCCTTTCACTCACTCTGTGCCTGCCTCTGGCCTCTCTGCTGTTTTCCAGAGACTCTAGCTCTGCCCGGCTCGGGGCCTCTGCCCCTGCTCTCCTCTGCCTGGAATGCCAGTGCTGGGCTTCCTGTGGTTGGCTCTTCTCATCCCTTAATCCCCACTCAATGTTCCCTTCTCTGGGTTTGCCGAGTAAATAAACAATGACTAACCCCTCTCCCCATCCTGCCCCTGCCCTGCCCAG
Seq C2 exon
GGCTCCTGTGTGGACTGCCAAGCCCTGAACACCAGCACGTGTCCCCCCAACAGTGTGAAGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000010327:ENST00000321725:18
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0246917=Fasciclin=PD(25.2=60.4)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGCAGAGGGTAGACGTGAT
R:
CAGCTTCACACTGTTGGGGG
Band lengths:
190-952
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains