GgaINT0020610 @ galGal3
Intron Retention
Gene
ENSGALG00000001535 | STAB1
Description
NA
Coordinates
chr12:628490-629592:+
Coord C1 exon
chr12:628490-628609
Coord A exon
chr12:628610-629544
Coord C2 exon
chr12:629545-629592
Length
935 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
3' ss Seq
GCTGTTTCTTTTTATTTAAGGAG
3' ss Score
7
Exon sequences
Seq C1 exon
AACAACGGAGGCTGTAGTCCCTTTGGGCTCTGCAAATACACAGGCCCTGGCACTCGAAACTGTTCCTGCTCTTGGCACAGCATTGGAGATGGCTTCACCTGCCGTGGTAAAGTTTATCAG
Seq A exon
GTGAGAAACATGCACAGCATCTTTTGTGTTCAAGCCTCCTGCCCCACAGCAAACCTCCCTCCAAGCACGAGCTGCAGGTCTGTAGTGTCATGTCACCGTGTGTGCGTGGTGTATGAGGGAAGGTAGATTTGGGGTTCTGACTTGGGGTGACAATCACAGTAAAGCAACCTTGCTCCAAAGGGAGCCACGATGTGAACACACTTGCTGTTCTGTTGACAGCCATGGCCATGCCTCCAATCACGTCATGTTTTCTAAATGTGACAAGCAAACCTTTCCCTGGTAAATCCACTTCTCCCATTCTGTCAAGATAGGTGACCCTGGTGGCCATGCCAGCGTGTGGGATCCAGGCTAGAAGGAGGCATGGCCAGGACTCTCTCCAGCTCTGTTGCCAATTCAGTGGCTGTGCTTGGGCAAACTGGTGACCTTTTTGGTAGAAGCAAACGAAAAGCTGTCAGAGATGAACAGTTGTCACATCCACAACAGAGATGGGAGAAAAGAGAGAGGCTCAGTTTTGTGCTCTCGCTCTGCTGTGTTGTGTAGAGGAGGTTGCGTTGCTAAACTGCTGTCTGCCACATGGGACAGTAACTGCTGGTGGCAGCATACTGAGGTTAAAGTGGATGTTCTGTGAAGCACTTGAGGTGCCCTGTGAGCAATCCCTGCAGAAGCAGCCAGCTTTCCATCCTCAGCAGTCCCTGCCCTCTTCGTCTTGCAGCATCTCTCATGTGAATGGTCAGGCAGATGTCACTGCCTGCTTTGTAACCTCCATGTCCTCCATGCCCACAGTGCTGATAAGGGAGGGAGGGCAAGGCGGCTCTGGTGTCAGGAGAACTGGTGTCTTACCAGAGTGGAAGAGTGACTTGGAGTCGAAGGGCAGGTCATAGTGCTGGCTGGTTGGAAGGAGCTCTGCTAACACCAGCTGTTTCTTTTTATTTAAG
Seq C2 exon
GAGCTCGCAAGGATAGAAGATGCATCTGTGTTCTTTAAGATGATACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001535:ENSGALT00000002333:47
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF129472=EGF_3=PD(89.2=82.5)
A:
NA
C2:
PF0246917=Fasciclin=PU(8.3=62.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]