RnoINT0144308 @ rn6
Intron Retention
Gene
ENSRNOG00000018434 | Stab1
Description
stabilin 1 [Source:RGD Symbol;Acc:2324745]
Coordinates
chr16:7228473-7228959:-
Coord C1 exon
chr16:7228837-7228959
Coord A exon
chr16:7228521-7228836
Coord C2 exon
chr16:7228473-7228520
Length
316 bp
Sequences
Splice sites
5' ss Seq
CTGGTAATG
5' ss Score
5.67
3' ss Seq
GCTGATCCTCGATCCCCCAGGAG
3' ss Score
7.64
Exon sequences
Seq C1 exon
AACAATGGAGGCTGCAGCCCTTATGCTGTGTGCAAAAGCACAGGAGACGGACAGAGGACATGTTCCTGTGATTCAACTCATACTGTGGGGGACGGCATCACCTGTCATGGGCGAGTTGGACTG
Seq A exon
GTAATGACTCCCACATCTGACCCAGGCTTGGTTGTGGTGATGCCTCATGCACCTGAACAGCAATCCTACCTAAGACCCCATATTCAGTCCTGATCCTTGACCATGACCCCATGACCCTGAATCTGACCTTTGATTCTTCCTGGGCTAAAACGTACCTACGTCACATGAAAACAATCCTGACCCTGGCTCAGAACCCTCCCCGGCTTTCCTTTCCTTGTCTCTGCCTTGGCCAGACCTTGGGCTGTTGGTGCTAGGACAGGCACCAGCCCCTGAATGGGGGGTCGCCCAAAATCTGAGCTGATCCTCGATCCCCCAG
Seq C2 exon
GAGCTCCTACGGAACAAGTATGCCTCGTTCTTCAGCCTCCACCTCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018434:ENSRNOT00000025394:45
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF129472=EGF_3=PD(89.5=82.9)
A:
NA
C2:
PF0246917=Fasciclin=PU(9.2=68.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]