GgaINT0020615 @ galGal4
Intron Retention
Gene
ENSGALG00000001535 | STAB1
Description
stabilin 1 [Source:HGNC Symbol;Acc:HGNC:18628]
Coordinates
chr12:630201-630521:+
Coord C1 exon
chr12:630201-630260
Coord A exon
chr12:630261-630344
Coord C2 exon
chr12:630345-630521
Length
84 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
3' ss Seq
TCCCTTCTTGTCTTGGACAGGAT
3' ss Score
9.8
Exon sequences
Seq C1 exon
CTGAACATCACAGAAGCAGCAGAGACCTTTGGGTACACCATTTATAGCAAGTTGCTGAAG
Seq A exon
GTGAGCCCTTGCCTCATGGGGAGCTGCTGAGCATTCCATTTTGGCCTGTGAACTTTTCTTCATATCCCTTCTTGTCTTGGACAG
Seq C2 exon
GATGCGGAGCTGCTGCCGCTGATCAGTAACCCCCTGCACAGACCCTTCACCATGCTCTGGCCTACAGATGCTGCATTTAATGCTCTCCCGGAGAAAAGGCAGCAGTGGCTGTACCACAGGGAGCACCGGGGCATGCTGGCCTCCTACCTCAAGGCACACATGATCAGAGACACGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001535:ENSGALT00000002333:52
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0246917=Fasciclin=PU(7.6=50.0)
A:
NA
C2:
PF0246917=Fasciclin=FE(43.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCACAGAAGCAGCAGAGACCT
R:
CGGTGCTCCCTGTGGTACAG
Band lengths:
181-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]