RnoINT0144314 @ rn6
Intron Retention
Gene
ENSRNOG00000018434 | Stab1
Description
stabilin 1 [Source:RGD Symbol;Acc:2324745]
Coordinates
chr16:7225125-7226883:-
Coord C1 exon
chr16:7226824-7226883
Coord A exon
chr16:7225302-7226823
Coord C2 exon
chr16:7225125-7225301
Length
1522 bp
Sequences
Splice sites
5' ss Seq
ACGGTACTG
5' ss Score
5.88
3' ss Seq
CACCATTGCTCAACCCACAGGTG
3' ss Score
7.89
Exon sequences
Seq C1 exon
AGAAATGTCACTGCTGCCGCTGAAAGCTTCCAATACAAGATCTTTAGCCGACTGCTGACG
Seq A exon
GTACTGCCCTCGTGAATGTGGGTCTGCCAATGCGTGCAATGTGAATGCGTGTGTGTGTGTGTGTGCAACGATGTGTGTGCAATGTGTGTGCATGTGTGTGAATGTCTGCATAGTGTATATGTGTGCAATGTGTATGTGTGCACAGTGTGTATGTGTGCAATGATGTGTGCACGTCTGTGAATGTATGTGTGCGTATGTGTGCATAGTGTGAATGTGTGCAATGATGTGTGTATGTGTGCAATGTGTGTGCATGTCTGTGAATGTATGTGTGCAATGTGTGTATGTGTGTGTGCAACCTTTTTCTGGGAACAGATGTGCCTATGTGAATTTCCTTGTACATCGTAAGAGCCTCCCAATGTGGGCACACATGAGGGAGTGTGCAACTAAGGTGTGTGGAAAGTTACCCTTGCATGGGTGACCATAAACAGTAGCTCCCCTACCCACAATTTTATATTCAGTCATGTTGGCAAGATGTCCCAGTGAGTGGACCGCTCGCTGCCAAGTCTGAGCACCTGAGTTTGCTCTCTGGGACCCACGTAGCAGGAGAAAACCAACCCCCGTAGGTCTCCACATGTGCAGTGGCAGTCGTGCTCTTTCCCCCAAGTCTCATACACACAAACAGAAGCAGGTTAAGTATAAAAACATTAAACCAAACGACCCAGAAATAGCTCAGGTTTTAAAAATATTCAATATTGATATTTGTTTTTGCTGCAAATTATTTAAAAATGTTCATGGTACACGATACTGGGTTTTATAAAGAATATTTTTATACAAGCAGACATTACATGTTTGTTTGTTCCTTGATTCCTTCCTACCCCATTCTGACCTCTTCCTTTTTAACTCTTTCATTCCTCTCGACAGCTTCATTCTTACTTAAGTCACATATACATGCGATTTTATGATTCTATCCGTAATCTAGAAACCACCAGTGAAAGAAAAAACACACAATATTTGTTTTTCTGAGACCTGCTGAATTCACATAATGTTATTATCTGCAGTTACATCTATTTTTCTGCAAATATGTAGCATTCTTTATTTTGAAAAAAATACTTTACATGCATAGTGGTTTTTAAATTCCTTATTTTCATTTTATGTTCATTGGTGTTTTGCCTGTACGTATGTCTGTGTCAGGTTTCTCTGAACTGGAGTTACATAGGAGGAAGGAATTGTCTTAGATCTAAGGCAAATTCTATGTGAACTGCCGTGTGGGTACAGGGATTTGAACCTGGGTCCTCTTAACTGCTGAACCCTCTCTTCATCCCTATTTATCTCTTACTGTCCCTAGTTTATAGATAATACTTTGTCCCAGGTAAGAAGTATATGTATGATTCATACAGATGGTTCATACATACGGTTCTCTGTAACTTAAGGCACGTGCAGGGTCTCTTCCGACCTGCAGATGAGAGAAAGACTGCCCAGGATGTCTGCCGACAAGCCTGGCTAGTTATCAGTACCTGGGTCTCTCTGGACCTCCGTTCTGTGGTCCATCCTCATCTCTGTCACACCATTGCTCAACCCACAG
Seq C2 exon
GTGGCTGGCCTCCTGCCCATGCTTCAAGATGCATCCCATCGTCCCTTCACGATGCTGTGGCCCACAGATTCTGCCCTGGAAGCCCTGTCTCCTGATCGGAAGAACTGGCTCTACCATGAGGACCACCGTGACAAACTGGCGGCCATTTTGCGTGGTCATGTGATTCGCAACATTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018434:ENSRNOT00000025394:50
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0246917=Fasciclin=PU(7.6=50.0)
A:
NA
C2:
PF0246917=Fasciclin=FE(43.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAATGTCACTGCTGCCGCT
R:
GTTGCGAATCACATGACCACG
Band lengths:
230-1752
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]