GgaINT0020622 @ galGal3
Intron Retention
Gene
ENSGALG00000001535 | STAB1
Description
NA
Coordinates
chr12:635259-635623:+
Coord C1 exon
chr12:635259-635363
Coord A exon
chr12:635364-635515
Coord C2 exon
chr12:635516-635623
Length
152 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGG
5' ss Score
6.74
3' ss Seq
GACCTGCACTCTGGTTTCAGCCG
3' ss Score
6.68
Exon sequences
Seq C1 exon
AGTGTAATTGCACTGAGCATGGCGTGTGCAATGGAGGGCTGCACGGCGATGGCTTTTGCTTCTGTGCCGAGGGCTGGACTGGAGAGCGCTGCGAAGTCCGTCTGG
Seq A exon
GTGAGGGCTGCCAACCCCTGACCTTCCCCATGCGGCTCACGGCTGGGCCCAGTGGCCTCGTCCCCCCAACCAACCTCCAGAGGGGCTCTGGGGCTGGCAGCCGTGCCCCCTTGGGGCACACCATGGCTCTCTGACCTGCACTCTGGTTTCAG
Seq C2 exon
CCGTGAAGCCCACCTGCTCACCGCCGTGCCACCCCCAGGCCTCCTGCCGCGCTGGCAACCTCTGTGAATGTGACCTGCCCTATGATTTGGGAAGCAGAGCCTGCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001535:ENSGALT00000002333:59
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGAGCATGGCGTGTGCAAT
R:
CAGGCTCTGCTTCCCAAATCA
Band lengths:
196-348
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]