RnoINT0144321 @ rn6
Intron Retention
Gene
ENSRNOG00000018434 | Stab1
Description
stabilin 1 [Source:RGD Symbol;Acc:2324745]
Coordinates
chr16:7223172-7223530:-
Coord C1 exon
chr16:7223426-7223530
Coord A exon
chr16:7223280-7223425
Coord C2 exon
chr16:7223172-7223279
Length
146 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
3' ss Seq
TGGGATGGGTCCTGGGACAGAGT
3' ss Score
0.83
Exon sequences
Seq C1 exon
CATGCCGCTGTGCCCCACATGGGCGTTGCGATGAAGGTCTCGGGGGCTCTGGCTCCTGCTTCTGCGATGAGGGCTGGACTGGGCCACGCTGTGATGTGCAGCTGG
Seq A exon
GTGAGTAGCCCTTGAGCCTGTGTCCGTGCAGCATCTGTGGATATACACTAGTGCATGCCCTGGCTGCACACCCAAGGGTGGATGGGAGACACAGTGGCTAGGAGGGCAGCTACTGACCTGATCCTCTGGGATGGGTCCTGGGACAG
Seq C2 exon
AGTTGCAGCCCGTGTGCACCCCGCCCTGTGCACCCCAGGCCGTGTGCCGTGTGGGCAACAGCTGTGAGTGCAGCCTGGGCTATGAAGGGGACGGCCGTGTGTGCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018434:ENSRNOT00000025394:57
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0005319=Laminin_EGF=PD(0.1=0.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACATGGGCGTTGCGATGAAG
R:
ACGGCCGTCCCCTTCATAG
Band lengths:
187-333
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]