GgaINT0021393 @ galGal3
Intron Retention
Gene
ENSGALG00000006802 | LAMB2
Description
NA
Coordinates
chr12:11842619-11842974:+
Coord C1 exon
chr12:11842619-11842715
Coord A exon
chr12:11842716-11842780
Coord C2 exon
chr12:11842781-11842974
Length
65 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGA
5' ss Score
7.66
3' ss Seq
TAACTGCTTTCTCCCTATAGCCT
3' ss Score
9.5
Exon sequences
Seq C1 exon
TTCACAGGGCAGTGCTCGTGCCGGCCAGGCTTCGGGGGCCGGACCTGTGCCAACTGCCAGGAGCAGCACTGGGGTGACCCACGGCTGCAGTGCCGAG
Seq A exon
GTGAGAGCTGGGTGGGCAGGAGCTGTGCCGTGCCCTGAGGCACCCTAACTGCTTTCTCCCTATAG
Seq C2 exon
CCTGCGACTGTGACCCCCGCGGCATCGCCAGCACCCAGTGCCATCATGGCAGTGGGCACTGCGACTGCCGGCCCGGCATCTCAGGCGTCCGCTGCGACCAGTGCGCCCGGGGCTTTTCTGGCACCTTCCCGGCCTGCCAGCCTTGCCACCCCTGCTTTGGGGACTGGGACCGCGTGGTGCAGGACCTGGCCTCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006802:ENSGALT00000036239:24
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.019
Domain overlap (PFAM):
C1:
PF0005319=Laminin_EGF=FE(66.7=100)
A:
NA
C2:
PF0005319=Laminin_EGF=PD(0.1=0.0),PF0005319=Laminin_EGF=WD(100=75.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTGCCAACTGCCAGGAG
R:
GAAGGTGCCAGAAAAGCCCC
Band lengths:
181-246
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]