RnoINT0084120 @ rn6
Intron Retention
Gene
ENSRNOG00000047768 | Lamb2
Description
laminin subunit beta 2 [Source:RGD Symbol;Acc:2988]
Coordinates
chr8:117277283-117277838:+
Coord C1 exon
chr8:117277283-117277379
Coord A exon
chr8:117277380-117277465
Coord C2 exon
chr8:117277466-117277838
Length
86 bp
Sequences
Splice sites
5' ss Seq
GCGGTGAGA
5' ss Score
7.4
3' ss Seq
TGGTTTGTCTTTTCCTGTAGCCT
3' ss Score
9.22
Exon sequences
Seq C1 exon
TTCACAGGGCAGTGCCACTGTCATGCTGGCTTTGGTGGGAGGACCTGTTCTGAGTGCCAAGAGCTCCACTGGGGAGACCCTGGACTGCAGTGCCGCG
Seq A exon
GTGAGAAATCTGGACAAACAGGTAGATAAAGACTATCTCGCCTGCATCATAAGGGCCCTAACACTGTGGTTTGTCTTTTCCTGTAG
Seq C2 exon
CCTGTGACTGTGATCCCAGAGGAATAGACAAACCCCAATGTCATCGTTCTACTGGTCACTGTAGCTGCCGCCCAGGCGTGTCTGGCGTGCGCTGCGACCAGTGTGCTCGTGGCTTCTCGGGTGTTTTTCCTGCTTGTCACCCCTGCCATGCATGCTTTGGAGACTGGGATCGTGTGGTACAGGACCTTGCTGCTCGTACGCGGCGCCTGGAGCAGTGGGCTCAGGAATTGCAGCAAACGGGTGTGCTGGGTGCCTTTGAGAGCAGCTTTTTAAACCTGCAGGGGAAGCTGGGAATGGTGCAGGCCATCGTGGCTGCCCGCAACACCTCAGCTGCGTCTACTGCAAAGCTTGTAGAGGCCACAGAGGGACTGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000047768:ENSRNOT00000072098:24
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.024
Domain overlap (PFAM):
C1:
PF0005319=Laminin_EGF=PD(66.0=93.9)
A:
NA
C2:
PF0005319=Laminin_EGF=WD(100=40.8),PF041117=APG6=PU(51.6=64.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTCTGAGTGCCAAGAGCTCC
R:
GGAAAAACACCCGAGAAGCCA
Band lengths:
181-267
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]