GgaINT0021399 @ galGal4
Intron Retention
Gene
ENSGALG00000006802 | LAMB2
Description
laminin subunit beta-2 precursor [Source:RefSeq peptide;Acc:NP_989497]
Coordinates
chr12:11553177-11553614:+
Coord C1 exon
chr12:11553177-11553321
Coord A exon
chr12:11553322-11553406
Coord C2 exon
chr12:11553407-11553614
Length
85 bp
Sequences
Splice sites
5' ss Seq
GCCGTGAGT
5' ss Score
8.56
3' ss Seq
CTGATGGCTTCCACCTGCAGAGG
3' ss Score
8.6
Exon sequences
Seq C1 exon
GTGGCTGAGGCCAAGGGGAAGGCGGACGAGGCTCGGCTGCAGGCGCAGGCAGCCCTGGACAAGGCTAACCAGACCAGGGCCCGTGTGGAGCACTCCAACAAGGAGCTGCGGGAGCTCATCAGCCACGTCAAGGCCTTCCTGAGCC
Seq A exon
GTGAGTGCGATGTGCTGGGGGGCTACCCCCGCTGCCCCCTCCGCCCTGAGGCACGGGGGGTGATGCTGATGGCTTCCACCTGCAG
Seq C2 exon
AGGAGGGCGCTGATCCCGAGAGCATTGAGGTGGTGGCCAGCCGCGTGCTGGAGCTGTCTCTGCCTGCCTCGCCGGCCCAGATCCACCGCCTGGCCGAGGAGATCAAGGCGCGGGTGCGCAGCCTGGCCAGTGTGGACGCCATCCTCGAGCAGACAGCTGGCGACGTGCGCCAGGCTGGGCAGCTGCTGCAGGATGCCCAGCGGGCCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006802:ENSGALT00000036239:27
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.612 A=NA C2=0.171
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGAGGCCAAGGGGAAGG
R:
ACCTCAATGCTCTCGGGATCA
Band lengths:
173-258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]