MmuINT0089677 @ mm10
Intron Retention
Gene
ENSMUSG00000052911 | Lamb2
Description
laminin, beta 2 [Source:MGI Symbol;Acc:MGI:99916]
Coordinates
chr9:108488526-108489374:+
Coord C1 exon
chr9:108488526-108488874
Coord A exon
chr9:108488875-108489166
Coord C2 exon
chr9:108489167-108489374
Length
292 bp
Sequences
Splice sites
5' ss Seq
GCCGTGAGC
5' ss Score
3.48
3' ss Seq
CCTTGCCTGTGTCTCCATAGAGG
3' ss Score
10.89
Exon sequences
Seq C1 exon
GTGTGTGGGGCACCAGGGGACGCACCCTGTGCCACCAGCCCTTGTGGGGGTGCCGGATGTCGGGATGAAGATGGGCAGCCCCGTTGTGGTGGCCTCGGTTGCAGTGGGGCAGCAGCCACGGCAGATCTAGCGCTGGGCCGGGCTCGGCACACGCAGGCAGAGCTGCAGCGGGCACTGGTAGAAGGTGGCGGCATCCTCAGCCGGGTGTCTGAGACTCGTCGGCAGGCAGAAGAGGCACAGCAGCGAGCACAGGCAGCCCTGGACAAGGCTAATGCTTCCAGGGGCCAGGTGGAACAGGCCAATCAGGAGCTTCGAGAACTTATCCAGAATGTGAAAGACTTCCTCAGCC
Seq A exon
GTGAGCCTCCCATGTGGCCCAGGCCATGTGCTTGCTTCCCTTGTGTCTGTGTGTACTTGAGTCTCGGTGTCTGCAATGGACATGTGTTTATAACCCTATGTCTGGCCCTGAGTCCCTGTCCAGTCAATGTCCCTAAGTCTGTGTCCCTTATATAGTCCCTGTTCCTTGGTTACATCCTTATGCCTGTTAGCAAACTCCTATTGCATGTGCAGTCTGAGACCCCAGAATACCAAGATTGTGTTCCCAAGGTCATGCAGGAGAGACTGTTAAGCCCTTGCCTGTGTCTCCATAG
Seq C2 exon
AGGAGGGAGCCGATCCTGACAGTATTGAAATGGTAGCGACTCGGGTGCTAGACATCTCCATCCCGGCCTCACCCGAGCAGATCCAGCGCCTAGCCAGTGAGATTGCAGAACGCGTCCGAAGCCTGGCCGACGTGGACACAATCCTGGCCCATACCATGGGCGACGTGCGTCGGGCTGAACAGCTACTGCAAGATGCGCACCGGGCACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000052911:ENSMUST00000065014:28
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.470 A=NA C2=0.329
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCCCTGGACAAGGCTAATG
R:
GCGCATCTTGCAGTAGCTGTT
Band lengths:
294-586
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types