GgaINT0021400 @ galGal3
Intron Retention
Gene
ENSGALG00000006802 | LAMB2
Description
NA
Coordinates
chr12:11844982-11845403:+
Coord C1 exon
chr12:11844982-11845189
Coord A exon
chr12:11845190-11845261
Coord C2 exon
chr12:11845262-11845403
Length
72 bp
Sequences
Splice sites
5' ss Seq
CAAGTGAGT
5' ss Score
9.1
3' ss Seq
CCGTGCCGCCTTGGCTGCAGGGC
3' ss Score
6.55
Exon sequences
Seq C1 exon
AGGAGGGCGCTGATCCCGAGAGCATTGAGGTGGTGGCCAGCCGCGTGCTGGAGCTGTCTCTGCCTGCCTCGCCGGCCCAGATCCACCGCCTGGCCGAGGAGATCAAGGCGCGGGTGCGCAACCGGGCCAGTGTGGACGCCATCCTCGAGCAGACAGCTGGCAACAGACGCCAGGCTGGGCAGCTGCTGCAGGATGCCCAGCGGGCCAA
Seq A exon
GTGAGTCTGGGGACGTGGGGACACGGCCTTGCTGCAGCCTGAGGCACTGAGGCCGTGCCGCCTTGGCTGCAG
Seq C2 exon
GGCACGGGCGGAGGGCGTGCGGGGCACAGCTGAAGCAGTGCAGCAGGCACTGGAGGAGGCGCGGCAAGCACAGGGCGCAGCCGGGCAGGCGCTGCACAGCACTGCTGCTGACATCCAGCACAGCGAGCACACCATCGGCACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006802:ENSGALT00000036239:31
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.400 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTGGCCGAGGAGATCAAG
R:
CTGCTGCACTGCTTCAGCT
Band lengths:
167-239
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]