GgaINT0021400 @ galGal4
Intron Retention
Gene
ENSGALG00000006802 | LAMB2
Description
laminin subunit beta-2 precursor [Source:RefSeq peptide;Acc:NP_989497]
Coordinates
chr12:11553407-11553828:+
Coord C1 exon
chr12:11553407-11553614
Coord A exon
chr12:11553615-11553686
Coord C2 exon
chr12:11553687-11553828
Length
72 bp
Sequences
Splice sites
5' ss Seq
CAAGTGAGT
5' ss Score
9.1
3' ss Seq
CCGTGCCGCCTTGGCTGCAGGGC
3' ss Score
6.55
Exon sequences
Seq C1 exon
AGGAGGGCGCTGATCCCGAGAGCATTGAGGTGGTGGCCAGCCGCGTGCTGGAGCTGTCTCTGCCTGCCTCGCCGGCCCAGATCCACCGCCTGGCCGAGGAGATCAAGGCGCGGGTGCGCAGCCTGGCCAGTGTGGACGCCATCCTCGAGCAGACAGCTGGCGACGTGCGCCAGGCTGGGCAGCTGCTGCAGGATGCCCAGCGGGCCAA
Seq A exon
GTGAGTCTGGGGACGTGGGGACACGGCCTTGCTGCAGCCTGAGGCACTGAGGCCGTGCCGCCTTGGCTGCAG
Seq C2 exon
GGCACGGGCGGAGGGCGTGCGGGGCACAGCTGAAGCAGTGCAGCAGGCACTGGAGGAGGCGCGGCAAGCACAGGGCGCAGCCGGGCAGGCGCTGCACAGCACTGCTGCTGACATCCAGCACAGCGAGCACACCATCGGCACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006802:ENSGALT00000036239:28
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.171 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTGGCCGAGGAGATCAAG
R:
CTGCTGCACTGCTTCAGCT
Band lengths:
167-239
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]