GgaINT0021972 @ galGal3
Intron Retention
Gene
ENSGALG00000008294 | Q9DEX2_CHICK
Description
NA
Coordinates
chr12:19100220-19103892:+
Coord C1 exon
chr12:19100220-19100348
Coord A exon
chr12:19100349-19103771
Coord C2 exon
chr12:19103772-19103892
Length
3423 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGA
5' ss Score
9.79
3' ss Seq
TATTTTGTCTTGTGTTCCAGACT
3' ss Score
9.22
Exon sequences
Seq C1 exon
GCTTGCAACAACACCAGCGACAGAAAGCATGCTGACTCCATATTGGAGAAGTACGTTACAGAAATAGTGATGAGTATCGTCACCACTTTCTTCAGTTCCCCATTCTCTGATCAGAGCACTACTTTGCAG
Seq A exon
GTAGGAAAAGAGTGGAGACACGGATGATGAGATGGTGCCAGCACAATTATGTTAATTCCACTTCGGTTCTGTTATCAGTTCAAAAGAAACACATGGGTGCAGATATGTATTCTTTGTGGCCAAGGTGTTTGTTTTGAGGTAGATTTTGTATATCGGTGTGCAAACATTTTCTGTGAGAGCAGTTACAACTTCATGAGTAAATTCAGTTCTCCTTGAGACCACACAGAAACTCTCTCCAGAAGGCCTACATGTCGTTATGAGGTTAGCAGTTGGATGGCAGGACAGAGTTCCGCAGAGCACATTGAGGAAAGAAGATAAAGCTTTGGTGGCAAGCCTTCCGGATAGGGGGAGAGAAAGTCACATTACAGAGGGTACAAACCCAGTATGTTTTATAAGATTATAATTTCCTTTAAAAACAAAACAAAAATGCAAAAGCTCCGCTCCATTAAACTGTTTAACTTCTGATCTGTAACAAAAGCGTGGGGGAGAACTTGGAATGTTTGTGACAGAGGTAGAGATTTCCTTTGCAGAACAGCAGTGTCAGGACATTGCCCTAATGTTTGTATTGCAGCACAGTGATAACATCATTCTTGTATTCAGAAATAACTTCTTGGGAGGAGTGGGGGTGGAATGGTCAGGTGTCTGGCTGATCTCTCAAGTTTGAGTATGGTGATTGCTGATACTTGATGCAACCTCATCATGCCAAAGGCAATTGTTCGGAGTGCAAACTCCAGGTTTGTAATTTAATGCAACTGGCAGCAGATTAGGAAGCATCTTGCTTCCCAAAGGCAGCCATAAGGGGCATCTGCCAATTGACCGTGGCAGTCCCTCATCACGGTGTGAATTGTAACCCTTTGGATCGTTCTGTGCTGCCTGGGTGACTGCAGGCTTCCAGGAAAATGTACATAGAACTGCTCCGTGACTGCATCAGGCGAGGAGTTCTTTCTGTGCAATGTTAGCAGTATGTTCCTGCCCTCGTTGAATCGGATATGTAGTTGACCCATGCCTGGATGACCAGTTTCCAGCCCGATCCATTCAACTATTTTATATTCAACAGAGGTCTGCTTCTCAGGCCTTATTCAGGCACGAAGTCGTCACACTGAAAGCAGCAGAGCTCTTTAATTGCCAGACTGTGTGCATTGCCTGTGAGAGCACAGAGAGCTGCAGCAGCTGTGTTTGGGCTGAGCAGCTTTATTAGAGTTGTGTCTTAACCCAGGCAAGTCTGAGCAGTCCAGCAGTTCATTTGCTTCTCATGTGACTTCAAAATGTCAGCAAGTATTGTACCATCAGCTTCCGTGAAAGTTTGTCAAAACTTCATCAAAAGATAAGAAGTTGAGATCAATGGTTAGCCTTGTTCCCCAGGGCTCTGCCCTTCTCCTCTCATCCCTCTGTGTTGTATACCTTGGCTGTCATACCTTTAACTGTCATCTGAGAGTACAACATTTGAATGCACTTTCTTATCACATGTTAGCTATCTGATAACTTTATATGTCAGCAGTTTTTCTTCAGTATCTCACTCACTCCTCCCTACACAGCTTATTTCATCCCTCCTTACCATCTCAATTGATAGCTCTGTCTTTTGTCTTATCCTGGATTTGCCTTGCTTCTACATCTTTGAGCTAAAAGCTGTCTGTCTCTACCTTTCCCTGCCTGTCAACACTCTTTCTCCCATCTGAGGAGTACAACCTGCTGGCATACATGGCTGGTGTGCATAACTCCTCCAGGTGGGGTTTTACCCCCAGATCTGAGATTCTGCAGGACTCCCTGTCCCTATAGGCAGACGACCTTTGTTGCCCAGCTTTGCCTTGCCTCTGGATTCGCTCGCTCCCCATTCTTTCTGCTGCACCTTGTCCTCTCATTTCTTTTCACGCGAGTCTCTTCTTGTCTCATGCTCTTTCATGTTATAGCTTGTTGGACTTGAATTGTGCCTCCCCTGAGTCAGGACCAGCCTTGCTTGTTCAAGGAACACCTTGTACATCCATCATACAGTTCAAATAATATAAAATTAGGAGAACATAAATGTCTTTTCAAAGAACAGCTGTCCAAAAATTTTCCTCTCTAACAAGTACTGTTTTGCTTGCCTGCCTCCTAAGGGTGCTGCTGCCCGAGGCTCTCCTTCACAAACGTTCTTGGAGGGATGTGGAACATGGAATGAATTTCTGATTTGATTTATGGATCTAGTTGGAGCACATTAAGCAGCTCTGAAGCTTTGTAGACCAGCAAGTCTTTGGAAAGGAACTGGAAGGACTGTCAGTGTCTGACGTCCAGAAGCGCAGATACTTTCGGTGCCCGCAGAGAACACTGCCGTGGTTTTGGTGTTTGGCTTATTTCTAGAAAGGATGCTGGGAATTTCAGCAGTAATCTTTAGATCTTTACTTTCGACTCTCCTTTTGTATATTTCATAGTGGTATTATTTAATGTATTGATCTAATAGACTTAATCATCTAATAGATTTGTTTTTTTCCTCTAACTCCATTTTTTTCTTACAAACAGACACAGATCTTGACCAGAATAAAAGAGGTATTTTTTCTCTGGTTCCTAACTCTTGTGGGCTGTGCACTGTGGTGTAGTTCACGTAGCTGCTAGAAACAAGACATAGCTAATAGGCAGTGGGATGTGGGTATTCCCTCTCAGGCAGAGTTCATTTGAAACATTTTAAATACTCCTTCTTCTATAGGTAAAATAAATGAATTGCTTTACAAAGTAATTATTATACAAAACCAAGTGGGGAGTTCTGATCGATATAGTTGGGATGTTGCAGAGATGAAAGAGCAAAGCTCATGTGCATATGTGTGTCAGAGCAGCTCACCTATCTGCAGTGGAAGATCGCCATGCAAAGTACAGGGCTAAAAACCACACGTTAATTTTGGCTGCTCTGTAACAACTGGTATTATTTACCACTAACTACTACCTATGTTCAAAATAAATACAAAGCTGGTTTCTTCAGTAAATTACATACCAGATGATATTTGAAGTGATGAGTTTTCAACTCTGTAGCTGTGCTGTTGCTTAGCCAAGAGTCAAGTCCCATTTACCTGTGGGCCATTGAGTCAGCTGCTGGTCAGTGCTAAAGGAAGAACCTCTGTGTGCCAGGTTTGCTGATAACTCTGATTAAACAGATTAAGATTACTGCTTATTTCCTTTGCTTAGTCAGGCTTCAATTACTAAAGCTTTATGCTTTAGAAGCTGTCTATTTAGTATTTCCCTTCCAGCCCTTGCTCCCACCCTCTCCATTTGGTTGCTGATGGTGTGGTAGATATGCTGTCTATGCAGTAGATTGTGTAACTAGAGGATGCAGAGCAGCTGGAAATGAGTGGTGTGCAAGAAGTCATGGCTGAAGCTGGAAACCAGCGTTACCTCAAGTTGATGCTGGCCCATCTCAGGATGATGTGATGCTTGATTTTATTTTGTCTTGTGTTCCAG
Seq C2 exon
ACTCGCCAGCCTGTGTTTGTTCAGTTGCTGCAAGGTGTGTTCAGAGTTTACCATTGCAACTGGTTAATGCCAAGCCAAAAGGCATCAGTGGAAAGCTGCATTCGGGTGCTCTCAGATGTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008294:ENSGALT00000013505:33
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]