GgaINT0022440 @ galGal3
Intron Retention
Gene
ENSGALG00000004476 | SEMA3G
Description
NA
Coordinates
chr12:2947756-2948150:-
Coord C1 exon
chr12:2947919-2948150
Coord A exon
chr12:2947848-2947918
Coord C2 exon
chr12:2947756-2947847
Length
71 bp
Sequences
Splice sites
5' ss Seq
CGGGTATGC
5' ss Score
7.73
3' ss Seq
TCTCCATTCTCCTCTTCCAGATG
3' ss Score
12.35
Exon sequences
Seq C1 exon
TGTCCCAGCAAGACCACCAACCAGCCCCGGAGGCCATACAGCAGCACCAAGGAGCTGCCTGACGAGGTGCTGCACTTTGCCCGCGCTCACCCCCTCATGTACAGGGCTGTGCGCCCACGGCATCACCGCCCGCTGCTGGTGAAGACTGACCTGCAGCAGCGCCTGCTCCAGCTTGTGGTGGACCGTGTAGATACTGAGGATGGGCAGCATGATGTCCTCTTCTTAGGGACGG
Seq A exon
GTATGCAGTGCAAGTGGCACGTGTGGATGTCTGGTATGGCATGAGGTCACGTCTCCATTCTCCTCTTCCAG
Seq C2 exon
ATGCAGGCTCGGTGCTGAAGGTGGTGGTGCTGCAGAAGCAGAGCTCAGCTGTGACAGAAGAAGTTGTCCTGGAGGAGCTGCAGGTCTTTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004476:ENSGALT00000007127:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.205 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(19.6=100)
A:
NA
C2:
PF0140314=Sema=FE(7.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCTGGTGAAGACTGACCTG
R:
AGCTCCTCCAGGACAACTTCT
Band lengths:
179-250
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]