RnoINT0132898 @ rn6
Intron Retention
Gene
ENSRNOG00000018952 | Sema3g
Description
semaphorin 3G [Source:RGD Symbol;Acc:1306079]
Coordinates
chr16:7308948-7309360:+
Coord C1 exon
chr16:7308948-7309179
Coord A exon
chr16:7309180-7309268
Coord C2 exon
chr16:7309269-7309360
Length
89 bp
Sequences
Splice sites
5' ss Seq
CTGGTAAGA
5' ss Score
9.45
3' ss Seq
CCTTTGTTCCTCTGCTCCAGATT
3' ss Score
10.05
Exon sequences
Seq C1 exon
TGTCCCAGCAAGATGACCGCACAGCCCGGCCGACCCTTTGGCAGCACCAAGGACTACCCGGATGAGGTGCTGCAGTTTGTCCGAGGCCACCCGCTCATGTTCCAGCCTGTGAGGCCTCGGCGTGGCCGCCCCGTCCTGGTCAAAACTCACCTGGCTCAGCAACTGTGCCAGATCGTGGTGGACAGAGTGGAGGCTGAGGATGGGACCTACGATGTCATCTTCCTAGGGACTG
Seq A exon
GTAAGAGGGCTGAACGGAGGTAGCCGGGTTTGTGGGCAGAGGGTAGCTAGCTTCTTCTTGTCTCACTAACCTTTGTTCCTCTGCTCCAG
Seq C2 exon
ATTCAGGTTCTGTGCTCAAAATCATCGCTCTCCAGGGTAGTGGCTTACCCGAACCGGAAGAGGTGGTTCTGGAGGAGCTCCAGGTGTTTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018952:ENSRNOT00000025656:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.103 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(17.3=100)
A:
NA
C2:
PF0140314=Sema=FE(6.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAAACTCACCTGGCTCAGCA
R:
TCCTCCAGAACCACCTCTTCC
Band lengths:
168-257
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]