GgaINT0022442 @ galGal4
Intron Retention
Gene
ENSGALG00000004476 | SEMA3G
Description
sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3G [Source:HGNC Symbol;Acc:HGNC:30400]
Coordinates
chr12:3119722-3120090:-
Coord C1 exon
chr12:3120049-3120090
Coord A exon
chr12:3119936-3120048
Coord C2 exon
chr12:3119722-3119935
Length
113 bp
Sequences
Splice sites
5' ss Seq
CGCGTGAGT
5' ss Score
8.4
3' ss Seq
CGTATTGTGCCTTCCTCTAGCAA
3' ss Score
7.71
Exon sequences
Seq C1 exon
GTGCCGGTGCCCATCACTCAGATGGAGATCTCTGTCAAGCGC
Seq A exon
GTGAGTCCAGGGTTGGGGTCAGGGTGGGTGACCAGGAGGGGCTACACGAGGTGGGGTCAAGCATCACCACTGGGAGGTAGCTGACACCATTGCCGTATTGTGCCTTCCTCTAG
Seq C2 exon
CAAAAGCTTTATGTGGGCGCCAGCCTGGGGGTGGCCCAGGTGCGGCTGCACCAGTGCAAGAGCTACGGCACTGCCTGTGCTGAGTGCTGCCTGGCCAGGGACCCGTACTGTGCCTGGGATGGCACTGCCTGCACCCGCTACCAGCCCTCGGGCAAGCGCCGCCACGTCCGCCACACCAGCTCTGTGCACCAGTGCCTGGACCAGAACCTGACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004476:ENSGALT00000007127:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.028
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(2.9=100)
A:
NA
C2:
PF0143720=PSI=PU(96.4=75.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGGTGCCCATCACTCAGAT
R:
AGTCAGGTTCTGGTCCAGGC
Band lengths:
252-365
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]