RnoINT0132900 @ rn6
Intron Retention
Gene
ENSRNOG00000018952 | Sema3g
Description
semaphorin 3G [Source:RGD Symbol;Acc:1306079]
Coordinates
chr16:7310276-7311863:+
Coord C1 exon
chr16:7310276-7310317
Coord A exon
chr16:7310318-7311628
Coord C2 exon
chr16:7311629-7311863
Length
1311 bp
Sequences
Splice sites
5' ss Seq
AGGGTAAGG
5' ss Score
9.16
3' ss Seq
CTTGCATTTCCTTCCCCCAGCAA
3' ss Score
8.33
Exon sequences
Seq C1 exon
GTACCAACACCCATCACTGAGATGGAGATCTCTGTCAAAAGG
Seq A exon
GTAAGGCCAGCCTGTATCCTTTCTCCTAAACTTGCTGTGAACTCTGCTGAGAGCTGGGCCTATTGCCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCGCGCGCGCGCGTGCGCCTGTGTGTGTGTGTCTGTGTGTGTGTGTGCCTGTGTGTCTGTATGTGTACTTGTGTGTGAGCCAGTGTGTGTGTGTACCTGTGTGTGTACGCCTGTGTGTGTGCCTGTGTGTGTGCCTGTGTGTGTGTGCCTGTGTATGTGTGTGCCTGTGTGTGTGTGTCTGTGAATGTTTGTGTGTTCGTGAGTGTGTGCAGAGGACCTCCCAGGTGCTACTCATCTTTTTGAGACAGAGTCATCATTGGCCTAGAGTTTGCCAATCATGTTAGGGTGAGTGGCCAGCAAGCCCTAAAGCCTGTGTCTGCTTCCCCAGGCTGGAATTGCAAGTGGGACCTCAATATCCTGCTTTTTTACATACAGGTTCTGAGGACTGAGCTCTGGTCTTTGTGCTGAAGCACTTGTTTGAACCATCACCCCTAGCCTCTGGGCACAAATCCCAACTTTTTTAAACTTCTTAAAACATTATTTTATTTACTTTGGTAAAGCCCTGCCGAGCCTAAGTTGCAGTGAGCAAGGCAACAAGCCTACAGGACCCTGAGAGTTCTTGTGACAAATGGAGGCTAGAGATCAGAGAACAATTTGTAGGAGCCCAGTTCTCTCCTTTTACCACAGAGGGCAGAGGGGGCAAACTTAGATCGTCAGGTTAGGTGGCCAGCACCTTTTTCTACCGAGCCATCTCACTGGTCCACAGCTGGGATTATTAGACATGCCCTCTTTATAGCCCATGGCCACATGCAGCTGAGGACAGCCATGCCTGTAGCCCAACACAAAATCATAAACTTACTTAAAACATGCGGTATTTTTTTTTCTAACTTGTTTTTGGTTACTTGGTTACTCACACGTGACCTTTGCAGATGGCAGCTTCGTATGACAGGGTCAAAAGGCTAGACAGGCCTGCAAGGTACAACTCTAAAGCGAGAGGCCAGTCACACAGAATCCCTTAGGCAGAGGTTGACAGGAGAGAAGGCCTGAAGAAGTCCTGTATAGAGAAGACCCAGCTTCACCCCACCTACTCGCAGCCTAGAGTAGGCTCTGGAGTGCACTCAGCATCTCTACACTTGGGAACGAGTTCAAGACGTTCTGAAAGCCCTTCTGGAAACTGATGGGTCTCAGGGAAGCCTGGGGGTTGAGAGCCTGTTGGCGAAGCCCAGCTCACTGGGCCTCTGCTTGCATTTCCTTCCCCCAG
Seq C2 exon
CAAACGCTGTATGTGGGCTCTCCACTGGGCGTGGCCCGGCTGCAGCTGCACCAGTGTGAGACTTATGGCAGTGCCTGCGCTGAGTGCTGCCTGGCCCGGGACCCATACTGTGCTTGGGACGGCACTTCCTGTGCCCGCTACCGCCCCAGCTCGGGCAAGCGCAGGTTCCGACGACAGGACATCCGACATGGCAATCCTGCTGTGCAGTGTCTGGGCCAGGGCCAGAGCCAAGACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018952:ENSRNOT00000025656:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.076
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(2.9=100)
A:
NA
C2:
PF0143720=PSI=WD(100=78.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTACCAACACCCATCACTGAGA
R:
CCTGGCCCAGACACTGCA
Band lengths:
262-1573
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]