GgaINT0022768 @ galGal3
Intron Retention
Description
NA
Coordinates
chr12:2485129-2485686:+
Coord C1 exon
chr12:2485129-2485274
Coord A exon
chr12:2485275-2485571
Coord C2 exon
chr12:2485572-2485686
Length
297 bp
Sequences
Splice sites
5' ss Seq
AAGGTCAGT
5' ss Score
8.68
3' ss Seq
CAGCGCTCGGTGCCCGGCAGAAC
3' ss Score
3.58
Exon sequences
Seq C1 exon
AGCCCACGTTCGTCGGTGCCTTTGCCATCCCCGACACCCACAACCCACACGACGACAAGGTCTACGTCTTCTTCCGTGAGACGGCCCTGGAGGGCGGGCAGTGGGAGCGGCGACACATCCACGCCAGGGTGGCCCGGGTCTGCAAG
Seq A exon
GTCAGTGCGCAGCCAGGTGGGCGTTTGGCCTCCCCAGCTGCAGTCCCCACCCCTGCTGTGGGGCTGGATTTGGTGGTCTCCCCAGGTCTCTGCAGTCTCCAAATCCCCTCCGAGTGGGATCACAGTCCCCACCTCTTCCAGTGCTCTGCTGCAGAGCCGTGAGCGCATCCCCATTCCTGGGCACCCAGGCAGCGCAGGGGTTGGGGCTGGGGCTGTGGCCACGTGCCAGTGCTGGTGCTGGGCTGGGTGGGTGGATGCCAGGCTGGGCAGTTGTGCGCAGCGCTCGGTGCCCGGCAG
Seq C2 exon
AACGACGTCGGAGGGAAGCGTGGCCTCATCAACCGCTGGAGCACATTCCTCAAGGCCCGCCTGCTGTGCTCCATCCCCGGGCCCCAGGGCACGCAGACACACTTTGACCAGTTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003203:ENSGALT00000005073:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.020 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(11.0=100)
A:
NA
C2:
PF0140314=Sema=FE(8.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCCCACGTTCGTCGGTG
R:
CAACTGGTCAAAGTGTGTCTGC
Band lengths:
260-557
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]