GgaINT0022772 @ galGal3
Intron Retention
Description
NA
Coordinates
chr12:2486127-2486533:+
Coord C1 exon
chr12:2486127-2486349
Coord A exon
chr12:2486350-2486450
Coord C2 exon
chr12:2486451-2486533
Length
101 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGG
5' ss Score
6.92
3' ss Seq
ACTCTTTTCTCTGTTGGCAGATG
3' ss Score
9.9
Exon sequences
Seq C1 exon
TGCCCCAGCGAGACGTACGACCCACTGCTGCGCTCCACCAAGGACTTCCCCGACGAGGTGATCAGCTTTGTGCGCGCCCACCAGCTGATGTGGGAGCCCATCCGCCCGCTGGGCCGCCGGCCCGTCCTGCTCCGTGCCAACGTTCCCTACCGGCTGCGGCAGCTGCTGGTGCACCGGCTGGAGGCTGAGGGCCGCCACTACGATGTGCTCTTCCTTGGCACAG
Seq A exon
GTGGGGGCTCGGCACGACGCTGGGGATGGGTAACGGAGCCAGGCAAAGGGTGCGTGCACATTGTCAGATCCCCACCCCACAACTCTTTTCTCTGTTGGCAG
Seq C2 exon
ATGATGGGAAGGTGCTGAAGGTGGGGCTGCCCGGTGAGGTGGGTGCCGAGGCTGTGAGCCTAGAGGAGATCAGCGTCACCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003203:ENSGALT00000005073:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.027 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(16.9=100)
A:
NA
C2:
PF0140314=Sema=FE(6.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGAGGTGATCAGCTTTGTGC
R:
TGACGCTGATCTCCTCTAGGC
Band lengths:
249-350
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]