GgaINT0022773 @ galGal3
Intron Retention
Description
NA
Coordinates
chr12:2486451-2486646:+
Coord C1 exon
chr12:2486451-2486533
Coord A exon
chr12:2486534-2486604
Coord C2 exon
chr12:2486605-2486646
Length
71 bp
Sequences
Splice sites
5' ss Seq
GAGGTATGG
5' ss Score
8.98
3' ss Seq
TGCCTCCCTTTGCCCTCCAGGTG
3' ss Score
12.06
Exon sequences
Seq C1 exon
ATGATGGGAAGGTGCTGAAGGTGGGGCTGCCCGGTGAGGTGGGTGCCGAGGCTGTGAGCCTAGAGGAGATCAGCGTCACCGAG
Seq A exon
GTATGGAGGCACTCACTGGGAGCAACTGCCCGGCGCCCAGCAAGGCCTCAGTGCCTCCCTTTGCCCTCCAG
Seq C2 exon
GTGCCTTCACCCATCCTGGACATGAAGCTATCACCGAAGCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003203:ENSGALT00000005073:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(6.2=100)
A:
NA
C2:
PF0140314=Sema=FE(3.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGGGAAGGTGCTGAAGGTG
R:
CCGCTTCGGTGATAGCTTCAT
Band lengths:
123-194
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]