GgaINT0022774 @ galGal3
Intron Retention
Description
NA
Coordinates
chr12:2486605-2486913:+
Coord C1 exon
chr12:2486605-2486646
Coord A exon
chr12:2486647-2486755
Coord C2 exon
chr12:2486756-2486913
Length
109 bp
Sequences
Splice sites
5' ss Seq
CGGGTGAGT
5' ss Score
9.89
3' ss Seq
ACTGCGGTGTGCCCGAGCAGCAG
3' ss Score
2.15
Exon sequences
Seq C1 exon
GTGCCTTCACCCATCCTGGACATGAAGCTATCACCGAAGCGG
Seq A exon
GTGAGTCCTCATGCTTCTACCCCAATGGACAGGGCATCCGGCCCCGGCCCCTCACCCCCCCAGTGTGCCAAGGCCCTGTCCCGCTGACCACTGCGGTGTGCCCGAGCAG
Seq C2 exon
CAGGAGCTGATGGTGAGCAGCATGCAGGGGCTGCTGCAGCTTTCCCTGTCCCGCTGTGAGCTCTACGGGCCGACCTGCATGGATTGCTGCCTGGCCAGAGACCCCTACTGCACGTGGGATGGCAGTGCCTGCACCCCTCTGCTGCTCACGGAGAAGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003203:ENSGALT00000005073:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(3.0=100)
A:
NA
C2:
PF0143720=PSI=PU(58.3=66.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTTCACCCATCCTGGACATG
R:
CTTCTCCGTGAGCAGCAGAG
Band lengths:
195-304
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]