GgaINT0022776 @ galGal3
Intron Retention
Description
NA
Coordinates
chr12:2487007-2487304:+
Coord C1 exon
chr12:2487007-2487071
Coord A exon
chr12:2487072-2487173
Coord C2 exon
chr12:2487174-2487304
Length
102 bp
Sequences
Splice sites
5' ss Seq
AGGGTGAGC
5' ss Score
7.75
3' ss Seq
CCCGTCCCGTTCCCATGCAGGGA
3' ss Score
10.61
Exon sequences
Seq C1 exon
GCGTGCCCGGTGCCAGGACGTGCTGAAGGCTGATGTGCTCAGCCAGTGCCAGGACACAGCAGAGG
Seq A exon
GTGAGCACCAGTGCTGGGATTGGCGAGCAGCGGGGCACCACCGGCACCCTCTGCCATTGGGAAGCACAACGCCGGGGCTGACCCCGTCCCGTTCCCATGCAG
Seq C2 exon
GGATGGCGGCTGTGGAGCAGCCGGTGTTCGGTGTGGAGAAGAACTCCACGTTCCTGGAGTGCCGGGCGCGCTCCCCGCAGACAGCAGTGCGGTGGCTGGCACGGCGCGGAGAGGGGCCGGGGCTGAGCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003203:ENSGALT00000005073:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.068
Domain overlap (PFAM):
C1:
PF0143720=PSI=FE(36.7=100)
A:
NA
C2:
PF0143720=PSI=PD(3.3=4.5),PF0767911=I-set=PU(46.1=93.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGCCAGGACGTGCTGAA
R:
AGCCACCGCACTGCTGTC
Band lengths:
154-256
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]