GgaINT0022777 @ galGal3
Intron Retention
Description
NA
Coordinates
chr12:2487174-2487566:+
Coord C1 exon
chr12:2487174-2487304
Coord A exon
chr12:2487305-2487371
Coord C2 exon
chr12:2487372-2487566
Length
67 bp
Sequences
Splice sites
5' ss Seq
GAGGTATGA
5' ss Score
8.55
3' ss Seq
CTGACTGTGCCCGTGCCCAGGTG
3' ss Score
8.99
Exon sequences
Seq C1 exon
GGATGGCGGCTGTGGAGCAGCCGGTGTTCGGTGTGGAGAAGAACTCCACGTTCCTGGAGTGCCGGGCGCGCTCCCCGCAGACAGCAGTGCGGTGGCTGGCACGGCGCGGAGAGGGGCCGGGGCTGAGCGAG
Seq A exon
GTATGAGGGCAGCTGGGGTTGGGTGAGGGCGAAGAGGACAGCAGGGCCTGACTGTGCCCGTGCCCAG
Seq C2 exon
GTGAGGAGCGGCGGGCGCGTGGCGGTGCTGGAGCAGGGGCTGCTGATCCGCCAGCTGGGCCGGGAGGACGCCGGCACCTACGAGTGCCAGGCTGTGGAGCACTCCTTCTCCCGGCCCCTCACCCGCTACAGCCTGCACGTCATCCGGCACGAGGCCGCGGAGCCGCCGCATCGCCGGGGTAAAGGGGCTGAGAGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003203:ENSGALT00000005073:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.068 A=NA C2=0.308
Domain overlap (PFAM):
C1:
PF0143720=PSI=PD(3.3=4.5),PF0767911=I-set=PU(46.1=93.2)
A:
NA
C2:
PF0767911=I-set=PD(51.7=70.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACTCCACGTTCCTGGAGTGC
R:
AGCCTGGCACTCGTAGGTG
Band lengths:
183-250
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]