GgaINT0023884 @ galGal3
Intron Retention
Description
NA
Coordinates
chr11:21711920-21713605:-
Coord C1 exon
chr11:21713094-21713605
Coord A exon
chr11:21712003-21713093
Coord C2 exon
chr11:21711920-21712002
Length
1091 bp
Sequences
Splice sites
5' ss Seq
CAGGCGCTT
5' ss Score
-2.93
3' ss Seq
CACACTGCACAGTTTGACAGCTG
3' ss Score
-0.35
Exon sequences
Seq C1 exon
CAGAATCTGCTTCCACCAAAGCTACTTTGGCAGACATCTGTCAGCTCCATTCTCCTCCTGTTTCAGGAGGAAGCCAGAACTACCTATGCAGGAGTATCATCTGGGAAGCCATATCAGCCCCCTGAGCATGGAAGCCTGTTGGTTTGCCTGTGACAGATGCAGCAGAGATGGCAGTCTTTGGCCGCAGCTCAATGCAGCATACTGTTGCTCTGCTCCTCAAAGGTCATTTTGCCCAGCAGTTGGTTCTCTAACTCCACATTGCCCACTGGCAGCTGGAAAAAGTTCATTTCAGCTGCCAAAGCTGCCATTGCAGAGGGGTCCTGGCCAAACTGTGCCCGCAGCATCATGTCCATTTTCTCCAGGCGCCGCTTCAACCTCTTGGCCTCACGCTCCCGGATGAGCCGGGCCTGTCGTTTCTCTGGAGTTTCATTGGCACGTTTCACTCGCATGGCTTCTCGGTCTCGCTGTAGCCGCCGTGCCCGCTGTTCATCTGTCTCCTGCATGCGCTGCAG
Seq A exon
GCGCTTTGCCTCTCGATCCCGCATACGTCTCACCTCCCGCTCCTCAGGAGTCTCATTGTCCCGCCGGCTCTTCTTGGCAGTGCGCTCCCGCTCCAAACGCTGCAGACGCACTTCCAAGGGCTCGTTCTGCCTACGAAGCGCCCACTTTCGCATGCCAGGTGTCTGTGCCTCCAGCAGCTTACGATAAGCAGCACAGTTGTTGCACACTAGGAGGATGCCTGCAGGATACACAGGGCTGTGAAAGGTAATGTCCTTCCCTTTGATGCTGGAGGGGCCCTCGCTCTGTGGCATAGGCAGGCGATCTGCACTGAGCACCTCTGTCAGCTTCTCACTGGAAAACAGAAAGAGCAGTGTCAGAGACTTGGTACTGAAGGAAGAGTCCTCAACTCAGACTGACAGGGAGGCTCCTACCAGAGCCCATGACACAGCCCTGTGCCCCAAAATGCATCTGAATATCTAACATATACATCTATGTATCTAATATCAAGCAACATCATATACAGAGGTAGGAATGGGATTTGCCCAGAGCAGTATTCGGATTAGAAGAATGCAAAGGCAGGGATTAACCAGCAAGCTGCTCCTCTCTTTCATTTCTGTATTTCTTCTTTCAGCCCTATTTGCCTAGTCAGCGTCCTTCCACCAGGCAGGACATAAATGAGGAACATTTTGGTTTCTGTATGTAGTCCTGCTTTGGAAAAGAGAAGCCGTCTAGGTAGCACAGACCCAGTGTGATGGATTGTTGGGGAAGGGAAGTAATGGCTGTTCTCTCTCCTGTGACCGGTGACCCCAGTGCTCTCTGAACAGTGCTACATTGCATACAGCTAAGAAACACACTTCAAGCAGCAGTGATCACAGAGGTTTTAGCAGGTGATGTGGAGCTGCAGGAATGGAGAGTGTAAAGGAATCTCAGCCACTGGGGGTGCTCACAAACAGTTGCAAGTAGGGCAGAGATATGATTTCTCTGTCATTTAAGGCAATGCACCTAAGCTTTTCTGTGGGTACCCTCGCTCACTCACCAGACAGGGTGACCCTGACCTGTTGAATGTGGCGTGGCTGGTGAAGCGTGCTCCACACACTGCACAGTTTGACAG
Seq C2 exon
CTGGTCCTCTGAGTGGATCAGGAGGTGTCGTCCAAGGGAACCTGGTGAACTGAGGGCTCTTCCACATACAGGACACATATAGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000023425:ENSGALT00000038702:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.074
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCATTTTGCCCAGCAGTTGGT
R:
TGTGGAAGAGCCCTCAGTTCA
Band lengths:
355-1446
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]