HsaINT0015752 @ hg38
Intron Retention
Gene
ENSG00000224470 | ATXN1L
Description
ataxin 1 like [Source:HGNC Symbol;Acc:HGNC:33279]
Coordinates
chr16:71848010-71857333:+
Coord C1 exon
chr16:71848010-71848071
Coord A exon
chr16:71848072-71849623
Coord C2 exon
chr16:71849624-71857333
Length
1552 bp
Sequences
Splice sites
5' ss Seq
CAGGTAATA
5' ss Score
8.55
3' ss Seq
TCTGATTTGTTCCCTAATAGATG
3' ss Score
7.99
Exon sequences
Seq C1 exon
GCTCCCGAGCCAGCCGGGAGGACACTTACTACAGCTGCTCAGAAGCACCACTGGAAACTCAG
Seq A exon
GTAATACCGGCACTTTGAATTCCTTGTTTCAGGAAAATATCTGGGATGTCACAGTGGAAAAACAGAACAGAATGTAATATAGAAAGCTCTTTTCAGATCCAAAGAACTGGAACCTGGTTGGAAGAAATAGGCAGCAAAGTTCATGTGCACTGAAGTGTTCAGACCAAAAAGTTGCTTTATAACAATGGACAAAAGCATTTGTGAAAGGTGACAATAAGAGAAAAGGGAAAGAGAACTTTCTTATGAATCATACAGATACGGGGAAAAAAACAGGCATGTTTAGAGGAATGGAACCAGAATTTCATGGAGTGGTGCCTGGAGCAGACCTACAGTGGAGAAGGAGCTATTGGTAAAAGAAAGCACAAAGAAAAAAGAAAGGGAATGAATAGAGAAGGCAAATTGAAGGTGATCATTGAGAAGAAGCCTTTTGAGACTAGGGAACCGGAAGTGTACGTAAGGTCAGAAGAATTTAGAATTTTGTTGTTCTTTGGTGAAGAGGAGAAACAAGTTGACAGCAAACTAGTTTAATCACTTTCACTATATAGAGGCTGAGTTAAAATGTATTATTTCATGGGTCAAAGATGTTAATTTTCATAACCTGGTTAGGGAGCAAAGTCTTAAAAAAAAAAACAAAACACGAGCAGACCTGAGGGTTTTGGCACCTAGGTCCTTGAGGTACTGATGAGATGAGGCAAAGGAGGAAGAGAGTTTTTAGCCAGGCTTGGGATAGCAGTAGGTGAGATCATAACCCAAATTAGGCTACAGAAAGGAAGCAAGGATGAGGTCATATGTTCAGGAAAGAAGGTGGCACATTCATGTTTGGTAGCAAAAGGAGAAACTTAAGAAAAAGAGCCAGCAGGAGGCTGGGCGCTGTGGCTCACACCCGTAATCCCAGCACTTTGGGAGGCTGAGGTGGGCGGATCACCCAAGGGCAGGCGTTCGAGACTAGCCTGGCCAACATGGTGAAACCCCATCTCTACTAAAAATACAAAGTTAGCCAGGCGTGGTGGTGCATGCCTGTAGTCCCAGCTGCTTGGGAGGCTGAGGCAGGAGAATTGCTTGAACCCGGGAGGCGAGGTTGCGGTGAGCTGAGATTGCACCATGTACTGTGGCCAGGGCAACAAGAGCAAAACTCCATGTGTTTTAAAAAAAAAAAAAAAAAAAAAAAAAAGCAAAAGAGCCAGCAGGAAAGACCATGTGTTCAAAGCCCCCTTTGGGAAGAAGGCAGAAAAGAGACAAGGTGCTTATGAGACACATGACTAACCGTGAAGCTGTTGGTCTCCCTGGGCTTGTGGAGCCCACAGGTTATTTGTGCATTGGTGAATGCGTGTCCCTGTAGCTCTTTGTGCCTTGTGATTTCCCCGACTGTTTCTCTCATGTCCCAGGCTGGATGAGTTGGGGGTAGCCTCCTTGTCTGCCCCTTTCTCTTTCCTCCTTATTTTCTAACAGTCCCCTTTGTTACATCTTCCTCCATGGCACAGTTCTTTCTATTTCCTTTGTCTTGGCTCATCCCTAGGTTACTTTTCTTTGCCTCTGATTTGTTCCCTAATAG
Seq C2 exon
ATGTGGGCGCCCCAGCCAGAAGCAGAGAGGGGTACAGGGAAGCTACAGAGAAGCCCCTTCTGATGCCCCAGGGAGCAAGTCGACTCCTTCCAGGCTCCAGGAACACCACAAAGCAATATGAAACCTGTTCATGAAAGGAGTCAGGAATGCCTTCCACCAAAGAAACGAGACCTCCCCGTGACCAGCGAGGATATGGGGAGAACTACCAGCTGCTCCACTAACCACACACCCTCCAGTGATGCTTCTGAATGGTCCCGAGGGGTTGTGGTGGCTGGGCAGAGCCAGGCAGGAGCCAGAGTCAGCCTGGGGGGTGATGGAGCTGAGGCCATCACCGGTCTGACAGTGGACCAGTATGGCATGCTGTATAAGGTGGCTGTGCCGCCTGCCACCTTTTCACCAACTGGACTCCCATCTGTGGTGAATATGAGTCCCTTGCCCCCAACGTTTAATGTAGCGTCTTCACTAATTCAACATCCAGGCATCCACTATCCTCCACTCCACTATGCTCAGCTCCCATCCACCTCGCTGCAGTTCATTGGGTCTCCTTATAGCCTTCCCTATGCTGTGCCACCTAATTTCCTACCGAGTCCCCTCCTATCTCCTTCTGCCAACCTTGCCACCTCTCACCTTCCACACTTTGTGCCATATGCCTCACTTCTGGCTGAAGGAGCCACTCCTCCCCCACAGGCTCCCTCCCCGGCCCACTCATTTAACAAAGCTCCCTCTGCCACCTCCCCATCTGGGCAATTGCCACATCATTCAAGTACTCAGCCGCTGGACCTTGCTCCAGGTCGGATGCCCATTTATTATCAGATGTCCAGGCTACCTGCTGGGTATACTTTGCATGAAACCCCTCCAGCAGGTGCCAGCCCAGTTCTTACCCCTCAGGAGAGCCAGTCTGCTCTGGAAGCAGCTGCTGCAAATGGAGGACAGAGACCACGAGAGCGAAATTTAGTAAGACGGGAAAGTGAAGCCCTTGACTCCCCCAACAGCAAGGGTGAAGGCCAGGGACTGGTGCCAGTGGTAGAATGTGTGGTGGATGGACAGTTGTTTTCAGGTTCTCAGACTCCACGGGTAGAGGTAGCAGCACCAGCACACCGGGGGACCCCGGACACTGACCTTGAGGTCCAGCGGGTGGTTGGCGCTTTAGCTTCTCAGGACTATCGTGTGGTGGCAGCTCAGAGGAAGGAGGAACCCAGCCCCCTCAACCTATCCCATCATACCCCCGACCATCAGGGTGAGGGGCGAGGGTCAGCCAGGAACCCTGCAGAGCTGGCAGAGAAAAGTCAGGCCCGTGGGTTCTACCCTCAGTCCCATCAGGAACCAGTAAAACATAGACCTTTACCCAAAGCAATGGTTGTAGCCAATGGCAACCTGGTGCCCACTGGAACTGACTCAGGCCTGCTGCCTGTGGGCTCGGAGATCCTGGTAGCATCAAGTCTGGACGTGCAGGCCAGAGCCACCTTCCCAGACAAGGAGCCAACGCCGCCCCCCATTACCTCCTCTCACTTGCCTTCCCATTTCATGAAAGGCGCCATCATCCAGCTGGCTACGGGAGAGCTGAAGCGGGTGGAGGACCTCCAGACCCAGGATTTTGTGCGCAGTGCCGAAGTGAGCGGGGGGCTGAAGATTGACTCTAGCACGGTCGTGGACATTCAGGAGAGCCAATGGCCTGGATTTGTCATGCTGCATTTTGTGGTTGGTGAGCAGCAGAGCAAAGTGAGCATCGAAGTGCCCCCCGAGCACCCCTTCTTTGTATATGGCCAGGGTTGGTCCTCTTGCAGCCCTGGGCGGACGACACAACTCTTCTCTCTGCCCTGCCATCGGCTACAGGTGGGAGATGTCTGCATCTCTATCAGTTTACAGAGCTTGAACAGTAACTCAGTTTCTCAGGCCAGCTGTGCTCCCCCAAGCCAGCTGGGTCCCCCCCGAGAAAGGCCTGAGAGGACGGTCTTGGGATCCAGAGAGCTATGTGACAGTGAGGGGAAGAGCCAGCCGGCAGGAGAGGGCTCCCGTGTGGTAGAGCCTTCCCAGCCTGAGTCCGGTGCTCAGGCCTGCTGGCCAGCCCCGAGCTTCCAAAGATACAGCATGCAAGGGGAGGAGGCACGGGCTGCGCTGCTCCGTCCCTCTTTCATTCCACAGGAGGTAAAGCTGTCCATTGAAGGGCGTTCCAATGCGGGAAAATGAACCTCTTCCCCAGACCAGGACTGGGGCTTTACCCCAGAGCCTCGCCTCGCCGCCGTGAGCAGGCAGAGGATTTGCACACGCCGAGCAGGGAATGGCTTTCTTGGCAGTGAGATTTGGGGGAAAGGGGAGGCATGAAGTCAGCCTCCCAAGGCAGGATCTGTTGTTCATTACCCCATGGCATCCTTTCAGGACAACCCCAGAGGGTGTTGTGATGGGGAGCAGCAGGCCTGGGGCAAGGAAGGAAGGGGGTGCACACAGGAGAAGAAACATTCCAAAATCAGGGCCTCCCTGTTCTTTCCTCCCCATCCCTAGCTCCTGCAAGAGAAAGTCCAGGCTTTGGGAGCAGATGGCAGAGGGAGGGAGTAAAGAAAGAGCCAAAAATGATGATCCACAGCTTATAGTAGCAGTTAAACTGTCAGAAGTTTTTTTTCTTTTTTGTGGTAGAAGGGCAGGAGGCCCCAAGGTTGGAAATAAGAGGGTTCCCACCCAGAACCCTTCTTGTGAGAGATGCGCACTTTAAAGGGTGATTTTGTTCCAGATGTCTATGGCTGGGTGTGTGGGGGAGGAGCACTCTCATCTGCAGGACTCTGCTTGATCCTCTGCTTCATAGCCCTTCCCCATCTCTCCTCACCATTCTGCCTACAAGGCTTCTAGCAGCACGGGGGCCCGGAGGGAGAGCCCCTTCAGGGTTCAGAGTGAAGTACTACCTTGCCAGGGACTCAGTCAGGGGACTTTGGGAGAAAGACTTGATAGCCAGGCTGACTGGGTTCTAGGCAGGCCCTCTGGAAAGGTAGCTCACCTAACAAAGCTCCTCCATCTCAGCATGCCAGACCCACTTTGAAATCTCACAGAATCTTGCTGGTAATGGTGACTTTAGAACTAGTAGACCCTTTTTCCCAGGCACTGACCCCCCACCTTTGTCTGTGTTGTGCCCAAGTGCCTGCGCCACCCCCACCCTCCTGCTGCGCTGACCGCTGCATGGTGTCGTGACCTGGGCCTCATTTGTAGCTGCACTGCCTTTCCTTGTCTGCAAAGTTGGTTTTGTCCACTCTGACCAAGACCTCTAGTTTTTGGTGGGTAGGGGGTCTCTCTGGTTTCCCCTTCAGCTATAATCTCTATTTTTAAAATCTCAAAATCATGTCCCCTCCACTTCCACTGCCAAACAGCTTGGTGAAGAAACAAGAAGGGAACTATGCCCTGGGCCAGGGCGAATGCGTGGCTGGGCAGTGCCCATCATGGCATTTTCACATGTCCCATATGCCCCTCCTGTCTTATTCCACTGCTTCTCCCAGCATTCTGGTGCCTCCAAGCCATCCCCTCCCACCACCAGCTCTAAGATTCTAGGATAGTCTTGATAACATTTCAGTACCTGAATAGATGTCATTTTGTGTTGGTATATTCCTCTGCAAAAAGTATTTTCAATCTTGGTTGCATTGGCACCCCCCCTACCCCCCACCAATGTCTTAATCCCACATTTTCTTCACAACTTTTAGCATCAGCTCAGACCGTGGGGTTCCACTGGGTATTGGGAATTAGGCTCCCCCACTAGCTTTCAGGTGGGTAAGTTTTTTTGTTTGTTTTTTGGGGGTCTTTAGACTCTTGAAGGCAACTCAGGGTATTGTCCACGCAGCTCTCTGGTTAGACTTCTCCCAGGCTATGATCCTGGCATGTCCTTTATAAGGTATACTTGGATTGGCCGAGACCTGGCCTGGCATCAGGAGTCCAAACCTCTGAGGTCTGATCTCTGCTCTGTCAAGGACTTTCGGCAAGTCTCGTGACCTCTGGCTCTTTCACTTCCTCCCCACCTGCCAAATGGGGATAAATAATCTTACCTACCTCCTGGGGGGAGGGGAAGTTCTGAGAATGGAGTCATTCTTAGTGTTCAGGTGCTAAAGGTTGTTCTCCTGGGGGAACAGAGTGACTGAAACTGGCTTGTTTGCTACAAGCCCTACCCTCCACTCTTTCATTCCTTGAAAGCAGTTTGCCTGGTCAGTCAGCTTTTGGGGGTCCATCAAAGGAGGTTGCTGACCTGACCGTGAGTGCTTCAGTATCTGGTTTGTGTCAGAACCAGACGCCAACTTTGTACTGCATTTGGGATCATATCTTTCCCCTTCTCTGTCCCCCATTCTCTGAATGCTGCTTTCTCTGGCTTGTTTCCTACAGTGGGGGCCTGTGGGGTTGAGTCTTGAGGAATCCCCTCAAATGAGAAGGCCTTGGGAGAAGGCCTCATCTCTGGCTGTTTCATGAGCAACTCATTCCTAGAGTTCATTGTTTGCATGGGTTTCTCACAAGCGTCCTTCCTCATAGGAAGGCTCATCAACTGAATTTAGTGACATGTACACAGTAGATGCTCAAGCAGTGTCTGCAAGGACACAAGCTGAGCTTTCTCCTTATGGGGCAAACCTATGTCTAACCAGATACAGACCAATTAGTTTAGATCAAATCACCTTCCACTTGGGCTACTTGTGACTTTCCAACCTGGTAACTTCCACTGAATTCTGGAAAGAGAAATTCTTGAGGACCCTGGCAAGTTGGGCCCTGACCTTTCTGTTGCTGTCTCTTGCTGGTGAAGCAATACCAGCAGTTCCTGTAATACCACAATATCGTTCCATGCATATATAACATATTAATACTTGATTTTGCTGAGCTGCAAAGGTATCTGTCATAAAATATGGTCCCCAGGAAAAGAATCTCTGTGCTCTAAATCTCGGTCAGAGCTGTGGCCTCCCCCTTGCCTTTAACCTCTAGTTTAGTCTTTTCCTCCAGGCATGAAAAATATGACTAACCTGTGGTGTGTCCATTCTTCCTTATAGGAATTTCCTGAGTTTGCAGGAGACATGAGAGCAGTTTTTAGCGAGTATTTTAGTGGGAAGTTGCCAACTTTTTAAGAATGAGCAGTTGACAAGGGCCAGAGCCTGTCCCTTGTCAGCAGTAGGACATTTCCAGCTCTTAGGAATAGAAAGGAGGACTGCTGACTGTCTGGCGCTGTATAAAAATGTGTATACCAATTTGGGAATAGGGGAACCCAGTCATGGATGGATAATAAGCCAAGTCTTGAATCATTCCTATCAAGATTAGTATACATGAGGAAGAGGTGGCATGGGGGGAAGGGGCTCTGGGAGTTCAGAGCTGAGTACTTGTACCTGAGGGAGGGCCCCCAGCCAATCTGGGCTGGTCCTTCTATATTCTTGGTCCCAGTTGGTCATAACACCAAGGGCTTTGCCCTGCGCTGCTTTGCCACTGCTGCTGTCCGCTCACTGTCCTGCCTGCTGTCCTCTACAGCTCCCTATCCTTCCATGTCTTTGGCCATGTAGATTAAGTGTAGGCGTCCGGTTCATTCTTACCTGTGTTAGGCCATGTTATTTTATAGCGAAGTCATGTTCGATAGGGATGGTATGAAATGCTGCTGGTGGGCTGGTAAATCCAAAGGGATAAGGCTTCAGTGCTGTTGGGAGCCCTCTGGCTCCAAATGTCTGACTATCTTGAGGGAGAAACAAGCAGGTTTCTACTAGTGGTGTCTTCTGTTGTATTAACTTCTTTCCTTTGTGGTATCTTGTATCCTGTTTTAAAAACTAAATGAAGGGAACCACATTAGGGCCCATGCCAGCATCCCAGTGAAGTTCGTCCAGCTCCAGTTAGGTGGATTCTGGAGTTCGGAGAGGGTTTAAAGTTTGGCTGAAATAGCACCTCAAGTGGGGTTTAGTTTTATTTTTACCTGCGGGCATCATGGGCGATTTAGGGGGAAGCACAGGATGGTGGTGTGGTTTAAACCTGCAGCAAGCAGGCATGTTGAAGAGTTGAGTGATCACGCTGGAGATGAAGGGTTGGACATGGATTGACTGGGAAAAGGCCTGGGTCCATTGGAGTAAAGATAACCTAGTCGATTGAATTGGCCATGGGAAGTTAGGTCACAGTCTTATAAACAAAGTAAATAGGACAGAGACTAAGTTTTAGGGAGACATCTTGGCCTCCTAGGCTAAGTTTACTAAACCACACTGAAGCTATAGTACCTTCCAGATGGGCAAAAGTGTACACTACAGTTGAGGAGCTGAACCTTATTAGGTTGGATGTCGATCAGGAACCTGTTTGCCCTTTGCTGGGAAGCCTTCACTCTCCAGCTTTCCTGGGGTAGGGAAGGTCTCCCACATTATGCAATAATAAAATAAGCATCTGGGTCTTTGCAGCTGTCAGTTGCTCTTTCAACTCTAGGATCCATCTTTGGACCAGAAGCCTGGTCTGTGCCTAGGATGACACTGGCCCCAGAGATGCTAGAGTCGACTGCACTCTCTCCTTAGCTGCAGACCATGCACAGTGCCTGGGGCGGAAGGAGGAGAGGTGTTGCGGTTTGCCCTGCTGCCTCCCCAGCAGGAACAATAGTCATAAATGCACTTTTCACACTAAAGGTTTCTTTATTAGTTCTCCAGTTAAACCTAGATCCCTCCCTGGTAGATTGCGAACTCAAAGTTTTGTGATCCCAAAGCCATTCCACTGCAAATGCCCAGCAGTGAAGATGGCCTCAAATTGGGTTCTTGCCTGCAGTGTGTGTGGCAGCAGCCCATGTGCCTTTACCTGTTGTCAAACTTGCAAGCATTTATTTGTCTTTATGACTGTCATGGGGACTGAGGTTCTTCAGAGAAAGAGTGTGAGCTGATGACACAGTGGTTTTACACCCACCCCCTGGGCAGGGAGTTTGCACGTAGTTGTGAGCTGTGAGTGGTTAGTGCATTGCTGGTATTGCTGAAGGCAGGGTTGATCCCTCACTTGACTGATACTTGCATTCAAGAGAATCTAGATTGTGTTGGGGGAGGGACTGACTGTACTCATGGCTAACTTAAAGTATTAAAATAAGGCTGTCCCCTACAACCTTCTTAGTCACACAGGATCCCTGTAGCCAAAACAGTATATGATCCAGCTGCAGAGAGCAGACTGCTCTCAGCTTGCACAGCACCTTAGGCGAGGGAAGAATATACGGATAGGGAATGGGGTGGAGAAAGGATGGGAATGTTGTCATCCAGGTGGCTTTAGGGTCCTAAGGAGTGGAGAAGGATGGCACTGGGGAGGTCTGGATGGATCTGTGTAGGAGTTCCCTGTAGATAAATTACTGATCCCCCATCTACTATCCCCAGTATGTAATGGCTGAATTAATATGTAATCAACTGCATTGTATCTAAAGCCTTAGAACTAGTCAGGTGCTCCCTCCACCCAATACCATTTCTTACCCTCTAATCCTACCTGATCTTTAACAAAGCATTAATAATTCTAAGGATAATCTCTATTTTGTTGTGCTTTTTTGTAACTGTTTTAAATAAATCAATTTGTACTGTATATTTGTACTTTTGTGAGATCCTTTTTGCTGTTTTACCATTTTAAGTCTCTGTACTTGGCTACACACAGATTGTATTTTTATTGTTAATGCTCTTCTTATGGATACCTGCATTTAACTTGTGGACTATGTAAACACAATATCTATCAATATCTATATATCTATATATCTATCTATATAAACTACTAGCTTTTCCTTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000224470:ENST00000427980:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF085177=AXH=WD(100=16.7)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGAAGCACCACTGGAAACTCA
R:
TGATGGCCTCAGCTCCATCA
Band lengths:
354-1906
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development