GgaINT0027524 @ galGal4
Intron Retention
Gene
ENSGALG00000002093 | NR2E3
Description
photoreceptor-specific nuclear receptor [Source:RefSeq peptide;Acc:NP_989925]
Coordinates
chr10:896000-897356:+
Coord C1 exon
chr10:896000-896072
Coord A exon
chr10:896073-897205
Coord C2 exon
chr10:897206-897356
Length
1133 bp
Sequences
Splice sites
5' ss Seq
CGGGTAAGA
5' ss Score
9.84
3' ss Seq
TTTTGGCTCCGCTCCTGCAGGAC
3' ss Score
10.07
Exon sequences
Seq C1 exon
CGGGGACAGCCCAGCATGGCTGCGTCGCCGGCGGGGTCGGTGGTGAGCGCCGGGCTAGAGGACAGCCCCTCGG
Seq A exon
GTAAGAGCCACATGCTGCTGCACAGGTCTGTCCCCAGCGGGTCCTTCTGCGGGATGCTCGGGTCCCCATCGGTGTCCTTCTTCAGGAATCCCTGGGAGTCCAAACATGGTCCTTCTTTGGGATGCTCGGGGTCCTCCATCGTGGTCTTTCTCAGGAATTCTCAGGGTCCCCTATCGTGAGCTGTCTCCAGGATATTTGGATCCCTATCACAGTTCTTTCCTAGTATGTTTGGGGTCCCCCATCACGGTTCTCCTCTAGAATATTCGGAGTCCCCATCATGGCCTTTCTCCAGGATATCTGGGGTCCCTATTACAGTCCTTCTCTAGGATGCTCTCAGTCACGGTCCTTCCCTGAGATCCTTGGGGATTCTCATTGTGGTTGTTCTCCAGGATGTTTGGCTTCTCCATCATTATCTTCTTTCCCAGGACAACTTCTCCAGGATGCTTGGCATCCACCACTACCTTCCTTCTTCAGCATGCTTAGGGTCCCCTGTGGTTGTCCTCATCCAAGACACATGGGTTCCCCAGCCATGACCCCTCTCCGTGGTGCCCATGGTCCTCATTGTGAACCTTCTCCACAATGACTGGGGTCCCCCATCGTCATCCTTCTCCGGGCTGCTTGGGGTCCCCAGCTCTGCTCTTTCTCCACGATGCCTGCAGACTCTCTTCTGGATGTCTATGGTCTCTGCTCTTCCCCCAGGGACCGCGTGGTCCCCTGCTGAGTCTCTTCTGTGGGGCCGTGATCACAATCACAGCCCCTATCTGGGGTAATGTGTCCCCAGCCATGGCCCTTCTCCAGGACACCTGTGGTCCCCACTTGTGGCTCCTTGTCAGGATGCATGCTGTCCCCTCACTGGGACACCCGGTGTCCCCAGCCCCAGGGACATCATTTAATCCCATTTAAAAGTCCCGTGAGAGCTCATTCCATGGCACCCCTGGGGCGTGGGCTGATGCTGAGCCCTGTGTGCACTTCTTGGACTCCTCATCCATGTCATCTGGGATATCTGAGGTCCCCTGGGCTGGACCCATGGAAGTGGCAGTGCCCCATCATCTGAGTGAGGGGACTGATGAAGGGGGATGAGGGATACTTGGGTGTCCCTGCTCACCCTGAGTGTTTTGGCTCCGCTCCTGCAG
Seq C2 exon
GACTGAACCCAGCCCCTGGCAAGGCACTGAGCCCCGTACTGCTGTGCAAGGTGTGCGGGGACACCAGCAGTGGGAAGCACTACGGCATCTATGCCTGCAATGGCTGCAGTGGCTTCTTCAAGCGCAGCGTCCGCAGGAAGCTCATCTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002093:ENSGALT00000003264:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.150 A=NA C2=0.039
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0010513=zf-C4=PU(52.1=72.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]