HsaINT1025281 @ hg38
Intron Retention
Gene
ENSG00000278570 | NR2E3
Description
nuclear receptor subfamily 2 group E member 3 [Source:HGNC Symbol;Acc:HGNC:7974]
Coordinates
chr15:71810554-71811609:+
Coord C1 exon
chr15:71810554-71810861
Coord A exon
chr15:71810862-71811482
Coord C2 exon
chr15:71811483-71811609
Length
621 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGG
5' ss Score
9.99
3' ss Seq
CCCTGCCCCCTGCCCCTCAGGCG
3' ss Score
8.41
Exon sequences
Seq C1 exon
AGAAATCTCCTCAAGCCAGAGCCTGTGCTGTGAGGGGCTTCGGGACCTTGGGGCAGCTCCTGAGTTCAGACAGAGTTCAGGAAGGGAGACAGGGGCACAGAGAGACAGAGGTTCATGGACTGAGGCAAAGGCTGGGCCAGGCTCAGCAACCCAGGCCTCCCGCAGGCAGGCAGAGGCTGCCCTGTAACCCATGGAGACCAGACCAACAGCTCTGATGAGCTCCACAGTGGCTGCAGCTGCGCCTGCAGCTGGGGCTGCCTCCAGGAAGGAGTCTCCAGGCAGATGGGGCCTGGGGGAGGATCCCACAG
Seq A exon
GTATGGCTTCTCCTGGAGGTAGGGTTGGGTCTGGGCCCTTGGGGAGCAGGGTAAGGGCCAGAGGTTCGCAGGGACCATGGAAGGAGCCAGAACAACTCAGACCCAGCCCCGCCGGCTGTGGGCAAGGGTGGGGTAGCCTGTGGGTAAACCCAGAATCCTAGAAACACGGTGGGGCGGGGATGGGGGTTGGGGGCGGGCAGGCTGCAGAGCCAGGACAGGACAGCCTAGCCGATGGGGAAGGAAAGAACAGAGAAGCGCCCTTAGGGCTTAACAGCACAGAGGTCCCTAGTGGCGTTGACAAGAATGTTTCTGTGGGATGATGGAGCCTGAAGCCACCCACAGAGAAGGGATGGGAGCTGGGAAAGTGGAGCTAGGGCTCGGACTCTTGCTGAAAATTGGCCATTGAGGGAGGAGAGAGGGCAAGGAATGGGGGTGGGGGCTGGGGTGTGGATGCACAGTGAGGGAGACACTTCTCCAGATGGAAGAGTCACGCGTGGGTTCGTTCAAATGCGGGTGAGCGGGGCCTGAGGACTGGGAAAGGGACCCGAGGGAAGGAGGGGAGCGTGCAGCCCTGCCCCGGCCCAGCCCTGCCCTGGCCCAGCCCTGCCCCCTGCCCCTCAG
Seq C2 exon
GCGTGAGCCCCTCGCTCCAGTGCCGCGTGTGCGGAGACAGCAGCAGCGGGAAGCACTATGGCATCTATGCCTGCAACGGCTGCAGCGGCTTCTTCAAGAGGAGCGTACGGCGGAGGCTCATCTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000278570:ENST00000617575:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.450 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0010513=zf-C4=PU(52.1=86.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTTCAGGAAGGGAGACAGGG
R:
GTACGCTCCTCTTGAAGAAGCC
Band lengths:
343-964
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains