GgaINT0028470 @ galGal3
Intron Retention
Gene
ENSGALG00000007000 | NR2F2
Description
NA
Coordinates
chr10:17657626-17661877:+
Coord C1 exon
chr10:17657626-17657697
Coord A exon
chr10:17657698-17661349
Coord C2 exon
chr10:17661350-17661877
Length
3652 bp
Sequences
Splice sites
5' ss Seq
TTGGTATGT
5' ss Score
7.12
3' ss Seq
TTCTTCTTTATTCACTGCAGCGG
3' ss Score
8.63
Exon sequences
Seq C1 exon
CAAACTAAAGGAGAGGTAGAAAAAGGAAGATGCAAGCGATTTGGGACCTTGAACAAGGCAAATATGGTTTTG
Seq A exon
GTATGTTTACTTCTAGTTTTTTTTCTTCTTCTTTGACACTTTTTTTTTTGCGGGCAATGTGTTGTGATTCTTGTGTTTCTCTTCTAAGGAAAACAAAAAATCCAAAAAAGCAAATGTTAGCTAACGCGCATATTAAACGATCGTTTCTAAGGTTACGTGGGTTGCTCTAAGGAGGGGAAGAGGGGAAAGGGGGAGACCCGAGGCTGTGTAATCGCAGCACCGCCAGTTAGCACGTCCTTTAGCTAAATAAAGAAATCAGCAAACAAACAAACAAGCCAGCAAACCCAACGACCGGGATCGGCTCCCAGGTCCGAGGCTGCGAAGTGCCTCAAAGTCATTCCCAAAGCGGCGGCCGGGGCTGGGGATGGGGCCGGGGCTGGGGCTGCGGGCGGGGACGGGGCTCCGCGATCGGACCGCGCCGGGGCTGCGGCTGGCAGCGCTTATAGATACAGATATAGATATATTTAAGGGGGGGGTGTAGGGGGGGGAAAGGTCGGTGGGGAAGGTATAGCGCTAAGATCCCCTCTCTCTCCCCCTCCGGTCGCTTCCCTGGTTAAGTACAATGGAAAGAAGCTGGAATATACTCACCCTCCGAAGGTGTGGTTGGCGGCGCGGCGGAGGCTTTATGGCAGTTATTTATCCTTGCTTTATTACGGCAAAAGGCGCAGATCTGAGTTTAAGCAGCAAAAGTGTTTTGCTCTGACAGCCGCATGCGAGGCACGGTTCCTCGTTTAAAAAAAAAAAATCACAAAACAGGAGCACCCCCCACCCCCCCATCCCTGACCACTATCCCTTAAAAATACCTATTCGGCACAGGGCTGGCAGGAACCCTGACGCAGAAATCTTATAGTCCGGTCTAGGAGTGCCCAAGCCAATTAATTTTAAATCCTTAGGAATTAATCAGATTAAAATGTACAGAAGTTTCATTCTCGTATGCATACGTGAGCCAAAAGTCGTTTCCCTTTAAGAGATCCTTTTCTTTTAAAGTTGAATTTTAGGCAGATAAGAGACTTACACTAGGGGGCAGCCAGATACTGTACTTGCTCCAATCTTAAGCAATTTTTTTTTCCTCTCTCACAGCATATGCTCTGATTTAGCACTGTAAATTTTTCAGAGGACCCAACTCTGACAGCCCCTGGTGATTTTCAAAGTACCACAAGCCAGTGGTTAAAAATTGCATTGACTTGGAAGTTCAGAGGCACACAATAGGAGCCACTTTCCCTATTCATGGAACTTCAGTGTGGTGGAAGAGAAAAACACACACATACTACATTGAGGGAGAAGAGGAATTCATTGAATTCTGTTAGACGTAACTGCTTTCCACTGAGTTCAGAGCGAAACTCGGTATTTGTTCGATGCTCTATTCATATTGCGATTTAATCTAGAAAGAATTAGAGGGCTGCGAGGCAGCTTTCTGCCAGGGAAGCGGCTTCCCTCTCTTCCTCCTTGTTTGAAAAACCCCAAGATTTACACCGGCTCTATCCCCAACTCTATTTTAGCAAAATAAATCCTTCCACTCCCTCTCATTACAATAAATTTACATCTGCAGTAAAATGGCAGGAGGGATGCGCTTATTTATTTGGAATAAAAACAATAGAGCCTTACTCCTAAACAGAGCGTTTCTATTGTGACGGGGCTCGGAGAAGGACAGCGGAGAATGTCCCCTTCTTCGCGAGGCGCTCGGGTCTCAAATAGGATTTAGCAAAATGAACCGTAGTTCATTTTTCCATTCACCCGCTCTGCCTCAGCCCACTCGCAAACAAATGGCAAAGCGGCGAATGGTGCTAATAGAGAGTTACACCGCTCCATCCCTCGAAGAGCAAATAGTTAATGCGGGGCATTCTTCATTAATGCTCGAGCAATCGGCGGCACGGCGGTGTGTGAGCGTGTATCGGTGGCTTTGCATTGCTACGATCGTGTATTAATATCGTGGGTGCTGCGAAAACCGCGTTCCCTTCTGATTTCCGCGCCGAGGACGGTTTTTTAATGGTTTTGCACATGGCGAATTAATCCTGTTTACTTTGTCAGGTTCGAGGCAGGAAAGCCTTTATTTCTTTTTCATTCCTCGGGAAATCCAGCCTCAGCGGCAATGTGGGACCGTTCCGCGCCCCGTGCCCCATCCCTGCCCGGGGCTCAGCCCCTCTCCTTAGGGTCACTCGCGAGCCAGAAGGCGCTCGCACCCTTTTACCGGGGACAGACGCCTTTCCCCTTCCCGGACCTCGGGCATGGGTCGCTGTGCTCGGGCAGCGCCGTGTAACGGAGCCGCGGAGCATCCCCACCCGCGGGGTCCCGGCTCTGCGCCCGGCGAGCCCGCAGGTCCGCAGCACCTGCGGCCGCCAGCCGTGTTCCTGCGTGTGACACNNNNNNNNNNTGTGGTGGATTCTTATTATTCTGATTATTTTGAATTATGACGATTATGCTTTTATTCCTTAACTCCCTTCCCCCCCCCTTCCCCCCCTCCCCAACCTCACCCCACCACAACCCTCCCCCCCTCCCCAAATAAACTTTCTCTTCGTGAAAGAAAGAACCGTGGGAGGGGAGGAGGGGGCTCCCGCATGCTGCCCCGGAACCCACCGCGGCCGTCGCCGTGTGCCGGGGGGCGGCTGCTCGGGGACGGATTTCCACTCCGGAGCCGATGGCTCCGCCGGACGCTCGCTGTCCCCGCGGACCCCCCCTGCATGCTCGGGGCTCCCCGCTCGCATTCAGCCCCCGGCCCGCGGCTTAACCCAGGCGGTTCGAATTACGGTTACAATGGAACTCACCCTCCCGAGGGCTCTACAGCACTCCACTGTGGATTCCCAACCGGATTTTCCCTCCTCTAAAAACACATAGACACATCCCTCCCTCCGTGTGTGTGTGTGTGTGTGTGTGTACCGCCGTTTGCCTGCCTCTCCCCTCGCTCTGACCCCACTTTTCTCCTTCCTCCCTTCTCCCCGTCCTTCCTACGGGGGTGAGCAGCACCCAGAAGGAAGCGAGGGGCGATGGGGGCTTTGTGCTATAAAATTAGCCGGGAAATGTGAGCCCGCGGCCCCGCAGCGCGTCTGGACGCTGCTATGTAGGTTAAGGGTGAGGGGGCTCGGGACTTGCCGGGCTCCTCTTTGTGTTCCTGCGGGGGGAACCGGGCTCGGAGCGCGGCCGGCAGCGAGCAGAGCCCGAGCGCGGTGTCCGCCGTCCCCTCCCCGCCGTCCCCCTGTCCCCCGGCCCCTTTTTCTCTCTCCTTTTTTCCTCTCCCCATGTCAATGTCTGAACAAAACGCCACAGGCCCGCTTGCACGGGAAGGTGCCGCCGGATAAAGCCCGGCCCTGGGGGGGAGGTGATGCTGGGGCTGCTCGCTCCTCGCTTTCTTTTTCTTTTTTTCTTCTCGGGGGTTGCGAAGTGTCGGTGCCCTCTGCCCCCTGGCCGGCCCTCTCCCCCAGCCCCAAATCGATAAAGCCGCTTCGGTCGGAATGAAGGAAAACACAAAGCGTGGCCGTAGGAGGGGTGGAAGGGGGGGGATCGCTGGGTCCTGCCGTGTGCGGGAGGTGAGGCTGTGCCGGGCCGGGGACGCGCTGGGCTCGGGCCGCGGCACGGCCGCACGGAGCGGGCTCGGGGCTGGCGGCGCTCGGAGCAATTCAGATATTAATAGCTGTAGTTTCTTCTTTATTCACTGCAG
Seq C2 exon
CGGTCCAGAGGGGCATAATGCCACCCACACAGCCAACTCACGGTCAGTTCGCCTTGACAAACGGGGACCCTCTCAACTGCCATTCCTACCTATCCGGATATATCTCCCTTCTTCTGAGAGCAGAGCCCTACCCCACCTCCCGCTTTGGCAGTCAGTGCATGCAACCCAACAACATCATGGGCATCGAGAACATTTGCGAACTGGCAGCTCGGATGCTCTTCAGCGCGGTCGAGTGGGCCCGCAACATCCCCTTCTTCCCCGACCTGCAGATCACCGACCAGGTGGCCCTGCTGCGGCTCACCTGGAGCGAGCTCTTCGTGCTGAACGCGGCGCAGTGCTCCATGCCGCTGCACGTGGCCCCGCTGCTGGCCGCCGCCGGCCTCCACGCCTCCCCCATGTCGGCCGACCGCGTCGTCGCCTTCATGGACCACATCCGCATCTTCCAGGAGCAGGTGGAGAAGCTGAAGGCGCTGCACGTCGACTCGGCCGAGTACAGCTGCCTCAAAGCCATCGTCCTCTTCACCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007000:ENSGALT00000023630:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.019
Domain overlap (PFAM):
C1:
NO
A:
PF0010425=Hormone_recep=PU(67.3=74.6)
C2:
PF0010425=Hormone_recep=PU(67.3=74.6)
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]