MmuINT0110518 @ mm9
Intron Retention
Gene
ENSMUSG00000030551 | Nr2f2
Description
nuclear receptor subfamily 2, group F, member 2 [Source:MGI Symbol;Acc:MGI:1352452]
Coordinates
chr7:77502649-77511632:-
Coord C1 exon
chr7:77510979-77511632
Coord A exon
chr7:77503177-77510978
Coord C2 exon
chr7:77502649-77503176
Length
7802 bp
Sequences
Splice sites
5' ss Seq
TTGGTATGT
5' ss Score
7.12
3' ss Seq
TGTCTCCTTTCCTCCTGCAGCTG
3' ss Score
13.08
Exon sequences
Seq C1 exon
AAATGGTGGAATTTGGCTGTGCCTCGGGGTTGTCCTGCTTTGCAATATTGCCTATAGTTGTTTTCGGTTTTCTGCTAAGACTGAGCCGGGTTGCTCCAGCCTCCGACTAAACTCATTAAGTTGGGAGATTTTTTTTTTTTTTTCAATTGGAAGGGTGTTTTTAAAGTCTCCTCTTTCCAGCCCCAAACAAGGTGTAACAACGCACTCTTCCTTCTAAGGCATCAGATGAGAGACAAGGATCACTCCAGACAGCTCCTACCTACGGTTTGGGGTTTTTTTTTCTTAAAGGCGAGGCTTGCATTCCTCAGCAGCTATGTACAAAGCTCCCTGAAGCTGTCTCTCTCTCTCTAAAGTTAGTGTGCAGGCTTTTCCAACGGCTGAGAGCGCCTGGTACACAGGGAAGCAGTTCCTTGAGGTGGAAGATCTCTTCTTTCACCTTTCTTTTTCCCTGCAGACTAATGCCTACTTTTTTATCAGTTTGCACAATCGCTTAGATAAACACCGAGGAGGAGAGTCTCTTTAATTATCAAAGACACATCTTTTCAGGGGGCCAACAAAGCATTTATTTCACCCGCCAAACTAAAGGAGAGTTATTCCAGTTTAGAAGGAAGATGCAAGCGGTTTGGGACCTTGAACAAGGCAAATATGGTTTTG
Seq A exon
GTATGTTTGCTTACTGTATTTTTTTCTCTTTCTCTTCTTTCTCACTTTTCTCCTTGTGCTGTGTGGGGTTGGGGATGACTTGGGGCTTTTCAGAAAATCGCTTTGCTAACGTGTATGCAATGCCTCGGACTGTGGTTGAAGGGGTCTGGGGGAGGGTGGGGGCAGTCAATTCAGTGCGTTGCCATATTTTATTACATGTATGTGGTAGCAGAGGTGGAAGGGGGGGATACAATTGCAAAGCTGCCAAAATATGATTAAACCGAAGCATAAAGACTGCGGTTGCCTCCCATCTCCTCGTCCTGTCTTCTCAAACTCATTTCCTTCCATAGAACTGACTGAAAACCAATCCTATATGCCTGGTTTTCCAAGCAGCAGATTGTCTAGGTTTGCTAGCGAAGGGGCTGCTAGGCTGGCTTTGGGTATCAGAATTTCCTGTTCGATTTGCCTCTGCGCTTCATTTTGCAACCTTGTGCAGCTGACATGCAGGCAGGCAAGCAGGCAGGCAGGCAGGGACCAAAGCCTTGCCTGGCGCCCTCGGCCGCGGTTCCGGAAGGAGAGCGCTCTGTTAAGCTAGGAGAATCTCAAGGAGAAGGGTACTCACCATCGGGCGGGGTGGTGAAGCTGGCGTGCGGATTTCAGGCAAACGTTTACCTTTTTGCTGTCTATTGCAACTGCGCCGGGCTGACTTTAGAAGCAATTCTGTGCTCTGTGCAAAATGTTCATGGAACGGTTCCTCATTAAAAAAAAAAAAAAAAAGCCAGCGAGAGAGACGACAGAGGCAGAAAGAAAAAAGAGAGGAGGGGTGAGGGGGACGCACATAAACCCAGTTTCAAAAAAAAAAAAAATCATCTCTTCACTAGAGACTCCGGAAACGTAGAGGCAGCGAGATCCCAGCACAGTCCAACCAAGCCACAACCAAATAATTTTCAATCCTGAAGAATTATTCAGATTAAAATGTACAGAAGTTTCATTCTCCTATGCCTACGTGAGCCCCAAGTCGTTTCCCTTTAAGGGCTCCTTTTCTTTTAAAGTTGGATTTTAGGCAGCAAGGACTCTTACACTAGGGGGCAGACAGATACTGCACTTACTTCAATCTTAAGCAATTTTTTCCCTCCCAGCATATGCTCTGATTTAGCACTGTAAATTTTTCAGAGGACCCAACTCTGACAGCCCCTGGTGATTTTCAAAGTACCACAAGCCAGTGGTTAAAAATTGCATTGACTTGGAAGTTCAGAGGGACACAATGGAAGCCCCTTCTCTATTCACGGAGCTCCAGTGTGGTGGAAGAGAAAAACACACACGACTAGATTGAGGGAAAGGAGAAATTCAATGGATCCTGGATTCTACTGAGCTCAGAGTTAAACTCGGAATTGCTGGGGTCTGTATTCATATTGTGATTTAATCTGTAAAGAATTACAGACTAGCCAACCACTTTCTGCAAGGAAACCATATTCCTGGGAGCTGAGGATATATATTTTTTTCATATTAAGACAAATGTTTTCCCCTAACTTTGACCAGTCAAATAAAGCTTGCCACCATTCTCATTAAAATAGATTTACATTTGCAGTAAAGGGCTTGGCTGAGTTTTTAAAAATAATAACATATAGAGTTGTATCTTTTAATTTTAGGACTTTTAAATCTTAGAGTTAAGACAGCTGAGCATCTTTAAGAAGGGCATTTAAAAATATTTTTGCTCCTCCCCATCCCCAATTCGGCTGTCCTGTCTCTTCATTCTCTCAGTAAAATTAATTACAATTCATGTGGTGATTTTTTTCCCTTCCCTTTCTAAACAGCATTTCTATAGCTAAATGAGTCCTAAAATACAAAGTGAAGCACCTCTAACTCTGTGGTAGTTATGTGCCTAGCTGGCTGTAATTCTACAATTCATATATACATATATATATATATATATATATATATATACATATATATATATATTTGAAGTCTATAATTTCTTTAGCTTGAAAAATGAGGAACACACACACGAAGCTTCTCCTCAAAAATCACCTCTTCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGTGTAAAAAGTAATCTTGACATGGAAATGGCTGCACTGGAGAGGCAAGATTAACATTTCTCCATAATCAATTATGCTCATCTATTAAGTCGAGATGGGGCTACCTATTAAATTTCCTGTGTCAGCCTCAGTCTCACTATATGCTGAGCTTGCCTCTAATCTGACATTTGCAGTATCAAATAATTCCTTAAATCAGAGAAGTTTTTTTTAAAGACCCACAATTCTCTGAAATGACTTATTTTCTATCTTTCTTATTCTCTGTAGGAGAAAGTTATATGGTGTCTCTAATCAGCCAGAAGTGCTCAGCCTAGCTTTACTCTATGACCACCTTATTACACACCAGGTTTATGATAGGCTAGTACCTGCTATAGCTTGTTATTTCTTAAAACATTCAAATAATCACAGCACCTGCCGCTGTAGTGCAATATGTGAGTTCTGTGGAGAAAGGGAAGGCTGAGAAAGATTTCAGGGTGAAGCTTAAATAGGATTTTTTTTTCTCTTTGCCAAAAAGTCAGCGTCTGCCTGCCCATATCTTTCTGCCCTCCTTGTCTCACACTCTGTCTCTATGTGCAAAAGAAACTGCCCCGAAAGCGTGGTTTTCTCATGTCAACTGTATGTTCAGTTCATTTTACTAAAGTAAAATTTACACTGCCAAATTTCTGCACTACCAAGGATGCTTCCTAAAGTTGTTGTTTTACTCTTTGTGGTGTCTTCTTTTCCCTCTTGTAGCTCAGCAAATTTTATGTTAAAAAAATAATTTAATTGTTGGTAAACCTGTTTGACTTATGGATTTAGTTTTGTCTTGGTTCAAAGTATTCCCTATTAAAAACAAATTTCTCATACAATTATGGAATTCTCACAATCAACTAGCGGGTCTAAATCAAACAGCAAGTTTAGTCAGTAGAATATAATGTGTCCTGGAGGTTGGTTATAGAACTATATATGCTTTATGGTTAAAACTGAGGCACAAAGTCAAAGATACATCAATATCATTGGTTTGAGCGTCTTGAGATGAATGACACGGACAGTAGGGTTTGTTTGTTTTTCCTGCAGTGGCTGAGGTAGACTATGGCGTGTTTGTGGCTCTTATGAGTTATGCTGGTATTATTGCCATTTGGAGCAGGCTCGCTGGGTGTGTTTTAATGACTATATGAGTATTTAAAGAGAATTTGAACAATGAAGTCCATATTCAACTGTTCTATGACCTAGAAGCGTCGTCTTGGACGTCTTTGTCTGGGTACATTGACAAATGTGCATCTGATACATGTGCGTTTACATGTGTGTACAGAGGGTGTGCACAGGCAAGGCTGAGAGGCTGCCTCCGCCTGTCCATCAGCGGACAGAAAGGTCTTTCTCCCTCTTTTCATGACCGGGTGTGTGACAGGTCACTGGCTGGCCAGTTAGCTAAAACCAATAAGAGAGGATAAAGTTGAGAGGAATTTATTTTAATTGCATCATAACAATGAGGTGAAGTCTGGTGTTTCTCAGCATCCGAGATGCTTCATTTGAGCATTTAAAATGTCAGGCCACAAATCTATAAAATATTAGCCCTCCAAAGAAAAAGGCAAATATCGAACGGTTTCTTTTCCTATAAACAAACAAACAAACAAAAAGGAGCTACCAAGCCGAGCAAGTGATGGGAATTCATTAAGCAAAGGATTTGCCACCCTTCGGATCTAGCCAAATCTTTGGTTTGCAAGCCCAGATCCCGGCACCTTGCCACCTCCGCTGCGTACCCCTCTACAAAGAAGGGGAGAGCATTATTCAGTCTTTTGGAATAGTGGGTTCTACATAATGCGCCGGGAGTCCCGGGTGGACCGCGAGCGGCGCATTTAGAGGCATCGCCAAGTTGCGAGAGACTAAGTCTTTGGCTCCATCCTCAACCCCTTGCGGAGCCTTTAAGAGTCGTAGTGTGTGCGCCGCGCGCTAGTCTTGCCGCCAGGGCGGAAACCACTGTGCCCGATGCGGGGCGGCCGGGGTCCGCGCTCCGGGGTCCACCCGGGCCCATCCCCCTCTCTGTGGCCAGGACCGCGCGGCCACCCGTCCCCGCCCCCCTCCGTCCCCGCGCGCCCCGTGCGGCTGTCTCGACGCCGCTCGCGCTAGGACCGGGCTGCTCCCGCTGCCGCCATGGCGGGGCCGCTGCGCTCCGGCCAATGACGACGAGGGGGCGGCGCGCGCGCGCCGGGCCAGGCCAACCCCGGCGGCTGCCTTATAAGGCGCGCCGTCGCCATGGCAACGTGCGCTAAGTTGCAGCAGTCGTGTCAAAGTTCACTATATAGAGAGCTCAGTGAGCTGATCGCGGAGAAGCCACTTCTGCCAGCCCCGGCGCCTATAAATCGCATTCCCTCCCGCGCCCCCCTTTTTAGCATATTTGATCACTTTGATTCTGCTCTTTTCTCTCCGCGGTGTGTGCGTGCGTGCGCGCGTGTGTGTTTTCTTCTCCTCCTCCTCCTCTGCCGGAGTTGCCTCCTTTCTCCGGGTGCCGCGCTGCTCTTCCCTCTTTCATTCTTTCTCTCCGTTTCTCCCCCCTCTGCGCACGAAGGATGCGCTTCTAGGTGCTGATCTGCCCTCCTTTCTCTCTTATCATCTCTCCCCCGCCGCCGGCGAGTTGACTCTTTCCCTATGTGTGTGAGGCGGCGGCGGCAGCAGCAGCAGCAGCAGCAGCAGCAGCGGCTCCACCGGCGGCGGCAGCAGCGGCAGCAGCAGCGACTCCACCGGCGGCGGCGGCGCTAGACGCAGCGGCTCCGGGCCCGACCCGGAGGCTTCGGCGGCGGCGGCGGCGGCCCGGGCGGCCCGCGGAGAGCAACGAGCGGCCTCCGAGAGCGGCGGCGGCGGCGGCGGCGTCCGGAGCGAGCGCGGCGCGCGCCAGGCGCCCGGGGCAGGAGGCGGCGGCGGCCCAGCGCCAGGACGACGCCGCGCAGCGCCGGACGCGGACCACTTTCATGCTGATTCCCCCGGACCCGGGCAGAGCTCCGGCCACTCCGCGGGCCGCCGGCCTCCGCCCCGGCCTGCCTGGCTCCCAGGGCGCGCCCGCGCCCGGCGCCTCCGCTCTCCCAGTCCTCCTGATTTCGATGGCTTTCCTGAATGGCTGACTGTGGGCTGCCCTGGACTTGGCCCCCGGACAGTCGCCTCTCCTTCTCCTTCTCCTCTTCCTCCTCCTCCTCTTCCTCCTCCTCCTTCTCCTCCTCCAACTCCTCCGCTGCACACTAGATCTGAGAGCGAGAGAGTGAACCAGAGAGGGAGAGAGGGAGGGAGAGTGAGAGCGAGCGAGATCTTTAGAGAGATTTTTTTTTTTTTTTTTTTGCCTCCTACTTCTGTCTTGAAGCCAGACAATCGACTTGCAGCTCTCCCTCCCCTCCCTCTCTCCACGTTCTGCTCCCACTCTCTTTCCCCTGTCCCCTTGCCCTCCCCTCTGGACGGAAAGCCCCCCGAAACCAACAAAGCTGAGCCGAGGGAAACAAACAAAACAAACACACCGGGCCAGACAAGCAATCGACAAAACTTTGCAAAAGCAAAAACAAAAAAACAAAAAAGGAAAAACTAACCAACCTCAAATCAACTAGCCCTGAGCCACCCGGGGCGCCCTCCCGCGCCCTCTCGCACCCTCGCACACACAAAAGGCGGCGCGCCGGAGCCCGAGACCCGGGAGCCGCCGCCACCCCGCCGCCGCCCGCAGCCAGGGGAGCAGAAGTCCGGACGCGGCCCCCATAGATATGGCAATGGTAGTCAGCACGTGGCGCGACCCCCAGGACGAGGTGCCCGGCTCTCAGGGCAGCCAGGCCTCGCAGGCGCCGCCCGTGCCGGGCCCGCCGCCTGGCGCCCCGCACACGCCACAGACGCCGGGCCAAGGGGGCCCGGCCAGCACGCCGGCCCAGACAGCGGCTGGCGGCCAGGGCGGCCCTGGCGGCCCGGGCAGCGACAAGCAGCAGCAGCAGCAGCACATCGAGTGCGTGGTGTGCGGGGACAAGTCGAGCGGCAAGCACTACGGCCAGTTCACGTGCGAGGGCTGCAAGAGCTTCTTCAAGCGCAGCGTGCGGAGGAACCTGAGCTACACGTGCCGCGCCAACCGGAACTGTCCCATCGACCAGCACCACCGCAACCAGTGCCAGTACTGCCGCCTCAAAAAGTGCCTCAAAGTGGGCATGAGACGGGAAGGTATCGGCCTCTCATTTCTTCCCCCTTCGCCCGCGGTCCCGGGGCTCTGGGTGCGTTTGGCTAGCCTGCTCTGGGTAAGGACTCAGAAGCCCCGAGCTCTCCCGGTTGCAGTCGGAGGGGATTTGGTACTAGGAACCGGGGAGGGGGGTGGGGGTCTGCACTGCAACCCAGATCAGCCCCCACCCCCATTACAGTCCGCATGCTTTAGTAGACTTTCCTTCTCCACTCTTTCTTCCTCTCCCCCTCTCTCTCTTTCTCCCTCTCCGGACAGCTTTTCCTTTCCTTTGCATTGATTGAGAGTTCATTAGAGTTCACCTTTCTGCAAGGAATGGGTTGTTTGTTGTTGTTTTAAAGTCCCCCCCCTCTCTCTTCCCTTTCTCTCTTTCCTTGTTTTTCCTGCATGTTCAACATATGTCCCTCCTCCTTACCCCTCTCCCCAACCCCCACCTTTTCAGAAAAAAAAAAAAACAACCTGAGATTGTACTTTTGTACAGGAGGTTCAAATTACAAATGGCAATTTTATGCACTTCGCCGTATTAACGCTGCCGCCTGGGCAGAGCTCATGTGACCCCTCCGTGGATTAACATTCTGCTTTAAAAAAATACCTCTTGTTTTCTTTTTTTTTCCTTTCACTTTTGAAACCCTGAGAGCACTGTAGGGAGTAGGAAAGTGTGGGCAAGGGGCCTTTGGCCGCTGCTTTCCCTCTGCGCCAGTTGGGTCTTTGTGATATAAAATTATCCCAGAGCCGGGAACAGTGCTCTACCAATGGCGCGCTCCGCGCCTGGGCGCGGGCTCCGGGTTGGAGCGAGCCAATGCCGGGGTTTCTTTGTGTTTCTGCGAGAGCGACTCTCCCGGTCCTGAGTCAGATAACAGCGGGTGCCTGAGCCTCGCCGGCTTTCTCCGGTCGTCACCGGCCTTGTCTGGGCTCCGCAAGCGCCCCACGTCTGCTCCCAGCCTCTCTCCCGCTTCCTCTCCTCTCTGACGGCCTCACTCTTTCTCTCTCCGCCCTTTTCTCCCTTGTCTCTCCTCCTCCGAGCTGAGCTCAGGGATCAGGCAAAGACGCCAGACCAAGACTCTGTCTCTCGCCGGGGTTTCCTTCCTGGGCTGGGGTTGAGGTTACAAGGTTTGGGGACAGTCGTTCGGAGGTGGCCACAGGCCATCTGGGGTAAACCTTAATGTCTTGTGCAAAAGCGTCTCACCCTCCCCCTACATTCCCGTCTCGTTCCTTCTCCAATCAATAAGAAATATCAGCTATTTAGCAGTTTTTAAAAAGAAAGAAATGAAATGAAACGAAAGGTGCCCTAAGGATATGCTGCACCTCGCTTACAGCTCCAGGGACCCCATTCAAAGTGACCAATTCTGGGTCCTCGGCGGACCAAGCCTAGATGGGCCTCACAGGCAAGTGTTGATCTCTGGCGAGCAGAGCTGGCCTGGGAAGTGATTTGTGAGGAGTGGTTGCCAGGCCGGCAGGCAGCAGACTCTTGTGTCTGTTTGTAGCAGGCCTGCTGTTCTGGGCCTGGGACAGGTTGGTGTCTTGTAGAAGGATGCGGGACCAAGGCTGATCATTAACTGTGGAGTGTCTCCTTTCCTCCTGCAG
Seq C2 exon
CTGTACAGAGAGGCAGGATGCCTCCTACCCAGCCTACCCACGGGCAGTTTGCCCTGACCAACGGGGACCCCCTCAACTGCCACTCGTACCTGTCCGGATATATTTCCCTGCTGCTGCGCGCGGAGCCCTACCCCACGTCGCGCTTCGGCAGTCAGTGCATGCAGCCTAACAACATCATGGGCATCGAGAACATTTGCGAACTGGCCGCACGGATGCTCTTCAGCGCCGTTGAGTGGGCCCGGAACATCCCCTTCTTCCCTGACCTGCAGATCACGGACCAGGTGGCCCTCCTTCGCCTCACCTGGAGCGAGCTGTTCGTGTTGAATGCGGCCCAGTGCTCCATGCCCCTCCATGTCGCCCCGCTCCTTGCCGCTGCTGGCCTGCACGCTTCACCCATGTCAGCCGACCGGGTGGTCGCTTTTATGGACCACATACGGATCTTCCAAGAGCAAGTGGAGAAGCTCAAGGCACTGCACGTCGACTCCGCCGAGTATAGCTGCCTCAAGGCCATAGTCCTGTTCACCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030551-Nr2f2:NM_183261:1
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.071
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0010425=Hormone_recep=PU(67.3=74.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: