HsaINT1025290 @ hg38
Intron Retention
Gene
ENSG00000185551 | NR2F2
Description
nuclear receptor subfamily 2 group F member 2 [Source:HGNC Symbol;Acc:HGNC:7976]
Coordinates
chr15:96330717-96334603:+
Coord C1 exon
chr15:96330717-96332547
Coord A exon
chr15:96332548-96334075
Coord C2 exon
chr15:96334076-96334603
Length
1528 bp
Sequences
Splice sites
5' ss Seq
AAGGTATCG
5' ss Score
8.7
3' ss Seq
GTCTCCTTTCCTCCCCGCAGCGG
3' ss Score
12.39
Exon sequences
Seq C1 exon
AGCCCCGGCGCCTATAAATCGCATTCCCTCCCGCGCCCCCCTTTTTAGCATATTTGATCACTTTGATTCTCTGTTCTTTTCTCTCCGCGGTGTGTGTGTGCGTGCGCGCGTGTGTGTTTTCTTCTTCTCCTCCTCCTCTCCCCGAGTTGCCTCCTTTCTCCGGGTGCCGTACTGCCTTTTTTCCCCTCTTTCATTCTTTCTCTCCGTCTTTTTCTCCCCCCTCTGCGCACGAAGGATGTGCTTCTAGGTGGTGATCTGCCCTCCTCTCTCTCTTTTATCATTTCTCCCCCGCCGCCGGCGAGTTGACTCTTTCCCTATGTGTGTGAGGCGGCGGCGGCAGCAGCAGCAGCAGCGGCTCCGGCGGCGGCAGCAGCGGCAGCAGCGACTTCAGCGGCGGCGGCGGCGCTAGACGCAGCGGCTCCGGGCCCGACCCGGCGGCTTCGGCGGCGGCTCCGGCGGCAGCGGCGGCCCGGGCGGCCCGCAGGGAACGGCGAGCGGCCTCCACCCAGCGACTGCGGGCGGCGGCGGCCGGAGAGAGCGAGGCGCGCGCCGGACGCCCGGGGCAGGCGGCGGCGGCGGCGGCCCAGCGCCAGGACGACGCCGCGCAGCGCCCGACGCGGACCACTTTCATGCTGATTCCCCCGGACCCGGGCAGCGCTCCGGCCACTCCGCGGGCCGCCGGCCTCCGCCCCGGCCTGCCTGGCTCCCTGGGCGCGCCCGCACCCGGCGCCTCCGATCTCCTAGTCCTCCTGATTTCGATGGCTTTCCTGAATGGCTGACTGTGGGCTGCCCTGGACTTGGCCCCCGGACAGTCGCCTCTCCTCCTCCTCTACCTCCTCCTTCACCACCACCTCCTCTTCCTCCTCCTCCTCCTCCTCCTCCTCCGCCAACTCCTCGGCTGCACACCAGCTCTAAGAGCGAGAGTGAACGAGAGAGGGAGGGAGAGAGTGAGAGCGAGCGAGATCTTTGGAGAGATTTTTTTTTTTGCCTCCTACTTCTGTCTTGAAGCCAGACAATCGACTTCAGCTCTCCCTCCCCTCCCTCTTTCTCCACGTTCTGCTCCCACTCGCTCTCCTGTCCCCTTCCCCTCCCCTCCCGGCGGAAAGCCCCCCGAAACCAACAAAGCTGAGCCGAGAGAAACAAACAAAACAAACACACCGGGCCAGACAAGCCATCGACAAAACTTTGCAAAAGCAAAAACAAAAAAGGAAAAACTAACCAACCTCAACCAACCAGCCCCCGAGCCACCCGGGGCGCCCTCCCGCGCCCTCTTGCACCCTCGCACACACAAAAGGCGGCGCGCCGGAGCCCGAGACCCGGGGAGCCGCCGCCGCCCCGCCGCCGCCCGCAGCCAGGGGAGCAGGAAGTCCGGACGCAGCCCCCATAGATATGGCAATGGTAGTCAGCACGTGGCGCGACCCCCAGGACGAGGTGCCCGGCTCACAGGGCAGCCAGGCCTCGCAGGCGCCGCCCGTGCCCGGCCCGCCGCCCGGCGCCCCGCACACGCCACAGACGCCCGGCCAAGGGGGCCCAGCCAGCACGCCAGCCCAGACGGCGGCCGGTGGCCAGGGCGGCCCTGGCGGCCCGGGTAGCGACAAGCAGCAGCAGCAGCAACACATCGAGTGCGTGGTGTGCGGAGACAAGTCGAGCGGCAAGCACTACGGCCAGTTCACGTGCGAGGGCTGCAAGAGCTTCTTCAAGCGCAGCGTGCGGAGGAACCTGAGCTACACGTGCCGCGCCAACCGGAACTGTCCCATCGACCAGCACCATCGCAACCAGTGCCAGTACTGCCGCCTCAAAAAGTGCCTCAAAGTGGGCATGAGACGGGAAG
Seq A exon
GTATCGGCCTCTCATTTCTCCTTCCCTCGTCCTGGGTCCCGGGGTCCTGGGTACGTTTGGCTAGCCTGCTCTGGGTAAGGACAAGAAGCCCCAAGCTCTTCTCTTCGTATTGCAGCGGAAAAGGGTTTTATACTAGAAGCGAGTTCTGCATTGGAACCCAGACCCCAAATCCGCATGCTTTGGCCGACTGATTTCCTTCTTTACTCTCTCTTTGGGCTGTTTCCATTTCCTTTGCATTGATTGTGAGTTCACTGGAGTCTGCCTTTCTGCAAGGGATGGGGTGTTTGTTGTTGTTGTTTTAAAGCCTAGTTTACTTCTCTCTCTCTGCCCTTGTTTTTCCTGCATGTTCAACATGTCCCTCCCCCTCACCCCTTTCCCCAGCCCCCACCCTCTCAAAAAAAAAAAAAAAAAAACCTGAGATTGTACTTTTGTACAGGAGGTTCAAATTACAAATGGCAATTTTATGCACTTCGCCGTATTAACGCTGCCGCCCGGGCAGCGCTCATGTGACCCTCCGTGGATTAACATCCTGCTAAAAAAAAAAATACCTCTGCTTTCTTTTTTCCTTTCACTTTTTGAAACGAAGAGAGCGCGATAGGAAGTAGGAAAGGGTGGGCGAGGGGCCCTGGGCGGCTGCTTTCGCTCTGCGCGAGTTGGGTCTTTGTGATATAAAATTCGCCGAGCGCCGCGAGCCGTGCTTTGCCAATGGCGCGCTCGGCGCGGGGCGCGGGCTCCGGGTTGGGGCGAGCCAACGCCGGGGTTTCTTTGTGTTTCTGCGAGAGCGACTCTCCCGGTCCGGAGTCAGATAACAGCCTGGGCCCGAGCCTCGCCGGCTTTCCCCGGCCCTTACAGGCCCTGCCCAGGCTCCGCTAGTGCCGGCCGCCTGCTCCCTGCCTCTCCCGGCTTCCTCTCTCTTTAGCCGGCCTCTCTCTCTCCGCCCTCTCCCTCCGTCTCTTTCTCCGAGCACACTGATTAGACAGACGCCAGACCTCCGCTCTCTGCTTGTCTCTCACTGGGGGGGTTCCCCGCCGGGCTGGGGCTGGGGCTTCGGGGTTTGTGGGAGAGTCGTTCCGGAGTGGCCACAGGCCGTCTGGGGTGGACCCTCGTGCCTTTTGCAAAAGCGCCTCACCCTCCCCCCAGACTCGCCCCTCCCGCTCCCTCTCCTCCAATCAATAAGAAATATCAGCTGTTTAGCAGTAAAGAAGAAAGATGCCCTCAGAATGCTACATCCCGCCCACAGCGCCGGGGACCCCGAGGCAAGGTGGCCAATTCTGGGTCCTCGGCGGACCAGCCCCGAGCGGGCCTCGGAGGCAAGTGTGCCCCTCTGGCCCTCAGAGCTCGCCTGGGTGGTGGTTTGAAAGGAATGGTGCCAAGAGCCTGGCGACTCCAGCTCTGTGGCAGGCCTGCCTGGTTCTTGCGCTGCTCAGGGCCTGGGTCAGGTGGGGGTCGGGCTGGGGCAGACCCCGCCGGGGAACCTGGGGACTGAGGCTGGTCATTAACTGTGGAGTGTCTCCTTTCCTCCCCGCAG
Seq C2 exon
CGGTGCAGAGGGGCAGGATGCCGCCGACCCAGCCGACCCACGGGCAGTTCGCGCTGACCAACGGGGATCCCCTCAACTGCCACTCGTACCTGTCCGGATATATTTCCCTGCTGTTGCGCGCGGAGCCCTATCCCACGTCGCGCTTCGGCAGCCAATGCATGCAGCCCAACAACATCATGGGTATCGAGAACATTTGCGAACTGGCCGCGAGGATGCTCTTCAGCGCCGTCGAGTGGGCCCGGAACATCCCCTTCTTCCCCGACCTGCAGATCACGGACCAGGTGGCCCTGCTTCGCCTCACCTGGAGCGAGCTGTTTGTGTTGAATGCGGCGCAGTGCTCCATGCCCCTCCACGTCGCCCCGCTCCTGGCCGCCGCCGGCCTGCATGCTTCGCCCATGTCCGCCGACCGGGTGGTCGCCTTTATGGACCACATACGGATCTTCCAAGAGCAAGTGGAGAAGCTCAAGGCGCTGCACGTTGACTCAGCCGAGTACAGCTGCCTCAAGGCCATAGTCCTGTTCACCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000185551:ENST00000394166:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.507 A=NA C2=0.065
Domain overlap (PFAM):
C1:
PF0010513=zf-C4=WD(100=47.3)
A:
NA
C2:
PF0010425=Hormone_recep=PU(67.3=74.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAAGTGCCTCAAAGTGGGCA
R:
TCAACACAAACAGCTCGCTCC
Band lengths:
357-1885
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains