MmuINT0110516 @ mm9
Intron Retention
Gene
ENSMUSG00000030551 | Nr2f2
Description
nuclear receptor subfamily 2, group F, member 2 [Source:MGI Symbol;Acc:MGI:1352452]
Coordinates
chr7:77502649-77505479:-
Coord C1 exon
chr7:77504774-77505479
Coord A exon
chr7:77503177-77504773
Coord C2 exon
chr7:77502649-77503176
Length
1597 bp
Sequences
Splice sites
5' ss Seq
AAGGTATCG
5' ss Score
8.7
3' ss Seq
TGTCTCCTTTCCTCCTGCAGCTG
3' ss Score
13.08
Exon sequences
Seq C1 exon
CGAGGGAAACAAACAAAACAAACACACCGGGCCAGACAAGCAATCGACAAAACTTTGCAAAAGCAAAAACAAAAAAACAAAAAAGGAAAAACTAACCAACCTCAAATCAACTAGCCCTGAGCCACCCGGGGCGCCCTCCCGCGCCCTCTCGCACCCTCGCACACACAAAAGGCGGCGCGCCGGAGCCCGAGACCCGGGAGCCGCCGCCACCCCGCCGCCGCCCGCAGCCAGGGGAGCAGAAGTCCGGACGCGGCCCCCATAGATATGGCAATGGTAGTCAGCACGTGGCGCGACCCCCAGGACGAGGTGCCCGGCTCTCAGGGCAGCCAGGCCTCGCAGGCGCCGCCCGTGCCGGGCCCGCCGCCTGGCGCCCCGCACACGCCACAGACGCCGGGCCAAGGGGGCCCGGCCAGCACGCCGGCCCAGACAGCGGCTGGCGGCCAGGGCGGCCCTGGCGGCCCGGGCAGCGACAAGCAGCAGCAGCAGCAGCACATCGAGTGCGTGGTGTGCGGGGACAAGTCGAGCGGCAAGCACTACGGCCAGTTCACGTGCGAGGGCTGCAAGAGCTTCTTCAAGCGCAGCGTGCGGAGGAACCTGAGCTACACGTGCCGCGCCAACCGGAACTGTCCCATCGACCAGCACCACCGCAACCAGTGCCAGTACTGCCGCCTCAAAAAGTGCCTCAAAGTGGGCATGAGACGGGAAG
Seq A exon
GTATCGGCCTCTCATTTCTTCCCCCTTCGCCCGCGGTCCCGGGGCTCTGGGTGCGTTTGGCTAGCCTGCTCTGGGTAAGGACTCAGAAGCCCCGAGCTCTCCCGGTTGCAGTCGGAGGGGATTTGGTACTAGGAACCGGGGAGGGGGGTGGGGGTCTGCACTGCAACCCAGATCAGCCCCCACCCCCATTACAGTCCGCATGCTTTAGTAGACTTTCCTTCTCCACTCTTTCTTCCTCTCCCCCTCTCTCTCTTTCTCCCTCTCCGGACAGCTTTTCCTTTCCTTTGCATTGATTGAGAGTTCATTAGAGTTCACCTTTCTGCAAGGAATGGGTTGTTTGTTGTTGTTTTAAAGTCCCCCCCCTCTCTCTTCCCTTTCTCTCTTTCCTTGTTTTTCCTGCATGTTCAACATATGTCCCTCCTCCTTACCCCTCTCCCCAACCCCCACCTTTTCAGAAAAAAAAAAAAACAACCTGAGATTGTACTTTTGTACAGGAGGTTCAAATTACAAATGGCAATTTTATGCACTTCGCCGTATTAACGCTGCCGCCTGGGCAGAGCTCATGTGACCCCTCCGTGGATTAACATTCTGCTTTAAAAAAATACCTCTTGTTTTCTTTTTTTTTCCTTTCACTTTTGAAACCCTGAGAGCACTGTAGGGAGTAGGAAAGTGTGGGCAAGGGGCCTTTGGCCGCTGCTTTCCCTCTGCGCCAGTTGGGTCTTTGTGATATAAAATTATCCCAGAGCCGGGAACAGTGCTCTACCAATGGCGCGCTCCGCGCCTGGGCGCGGGCTCCGGGTTGGAGCGAGCCAATGCCGGGGTTTCTTTGTGTTTCTGCGAGAGCGACTCTCCCGGTCCTGAGTCAGATAACAGCGGGTGCCTGAGCCTCGCCGGCTTTCTCCGGTCGTCACCGGCCTTGTCTGGGCTCCGCAAGCGCCCCACGTCTGCTCCCAGCCTCTCTCCCGCTTCCTCTCCTCTCTGACGGCCTCACTCTTTCTCTCTCCGCCCTTTTCTCCCTTGTCTCTCCTCCTCCGAGCTGAGCTCAGGGATCAGGCAAAGACGCCAGACCAAGACTCTGTCTCTCGCCGGGGTTTCCTTCCTGGGCTGGGGTTGAGGTTACAAGGTTTGGGGACAGTCGTTCGGAGGTGGCCACAGGCCATCTGGGGTAAACCTTAATGTCTTGTGCAAAAGCGTCTCACCCTCCCCCTACATTCCCGTCTCGTTCCTTCTCCAATCAATAAGAAATATCAGCTATTTAGCAGTTTTTAAAAAGAAAGAAATGAAATGAAACGAAAGGTGCCCTAAGGATATGCTGCACCTCGCTTACAGCTCCAGGGACCCCATTCAAAGTGACCAATTCTGGGTCCTCGGCGGACCAAGCCTAGATGGGCCTCACAGGCAAGTGTTGATCTCTGGCGAGCAGAGCTGGCCTGGGAAGTGATTTGTGAGGAGTGGTTGCCAGGCCGGCAGGCAGCAGACTCTTGTGTCTGTTTGTAGCAGGCCTGCTGTTCTGGGCCTGGGACAGGTTGGTGTCTTGTAGAAGGATGCGGGACCAAGGCTGATCATTAACTGTGGAGTGTCTCCTTTCCTCCTGCAG
Seq C2 exon
CTGTACAGAGAGGCAGGATGCCTCCTACCCAGCCTACCCACGGGCAGTTTGCCCTGACCAACGGGGACCCCCTCAACTGCCACTCGTACCTGTCCGGATATATTTCCCTGCTGCTGCGCGCGGAGCCCTACCCCACGTCGCGCTTCGGCAGTCAGTGCATGCAGCCTAACAACATCATGGGCATCGAGAACATTTGCGAACTGGCCGCACGGATGCTCTTCAGCGCCGTTGAGTGGGCCCGGAACATCCCCTTCTTCCCTGACCTGCAGATCACGGACCAGGTGGCCCTCCTTCGCCTCACCTGGAGCGAGCTGTTCGTGTTGAATGCGGCCCAGTGCTCCATGCCCCTCCATGTCGCCCCGCTCCTTGCCGCTGCTGGCCTGCACGCTTCACCCATGTCAGCCGACCGGGTGGTCGCTTTTATGGACCACATACGGATCTTCCAAGAGCAAGTGGAGAAGCTCAAGGCACTGCACGTCGACTCCGCCGAGTATAGCTGCCTCAAGGCCATAGTCCTGTTCACCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030551-Nr2f2:NM_009697:1
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.514 A=NA C2=0.071
Domain overlap (PFAM):
C1:
PF0010513=zf-C4=WD(100=47.3)
A:
NA
C2:
PF0010425=Hormone_recep=PU(67.3=74.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCAAAGTGGGCATGAGACGG
R:
CGCATTCAACACGAACAGCTC
Band lengths:
354-1951
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: