HsaINT0115621 @ hg19
Intron Retention
Gene
ENSG00000185551 | NR2F2
Description
nuclear receptor subfamily 2, group F, member 2 [Source:HGNC Symbol;Acc:7976]
Coordinates
chr15:96876569-96877832:+
Coord C1 exon
chr15:96876569-96877086
Coord A exon
chr15:96877087-96877304
Coord C2 exon
chr15:96877305-96877832
Length
218 bp
Sequences
Splice sites
5' ss Seq
GAGGCAAGT
5' ss Score
3.32
3' ss Seq
GTCTCCTTTCCTCCCCGCAGCGG
3' ss Score
12.39
Exon sequences
Seq C1 exon
GGTCCGGAGTCAGATAACAGCCTGGGCCCGAGCCTCGCCGGCTTTCCCCGGCCCTTACAGGCCCTGCCCAGGCTCCGCTAGTGCCGGCCGCCTGCTCCCTGCCTCTCCCGGCTTCCTCTCTCTTTAGCCGGCCTCTCTCTCTCCGCCCTCTCCCTCCGTCTCTTTCTCCGAGCACACTGATTAGACAGACGCCAGACCTCCGCTCTCTGCTTGTCTCTCACTGGGGGGGTTCCCCGCCGGGCTGGGGCTGGGGCTTCGGGGTTTGTGGGAGAGTCGTTCCGGAGTGGCCACAGGCCGTCTGGGGTGGACCCTCGTGCCTTTTGCAAAAGCGCCTCACCCTCCCCCCAGACTCGCCCCTCCCGCTCCCTCTCCTCCAATCAATAAGAAATATCAGCTGTTTAGCAGTAAAGAAGAAAGATGCCCTCAGAATGCTACATCCCGCCCACAGCGCCGGGGACCCCGAGGCAAGGTGGCCAATTCTGGGTCCTCGGCGGACCAGCCCCGAGCGGGCCTCGGAG
Seq A exon
GCAAGTGTGCCCCTCTGGCCCTCAGAGCTCGCCTGGGTGGTGGTTTGAAAGGAATGGTGCCAAGAGCCTGGCGACTCCAGCTCTGTGGCAGGCCTGCCTGGTTCTTGCGCTGCTCAGGGCCTGGGTCAGGTGGGGGTCGGGCTGGGGCAGACCCCGCCGGGGAACCTGGGGACTGAGGCTGGTCATTAACTGTGGAGTGTCTCCTTTCCTCCCCGCAG
Seq C2 exon
CGGTGCAGAGGGGCAGGATGCCGCCGACCCAGCCGACCCACGGGCAGTTCGCGCTGACCAACGGGGATCCCCTCAACTGCCACTCGTACCTGTCCGGATATATTTCCCTGCTGTTGCGCGCGGAGCCCTATCCCACGTCGCGCTTCGGCAGCCAATGCATGCAGCCCAACAACATCATGGGTATCGAGAACATTTGCGAACTGGCCGCGAGGATGCTCTTCAGCGCCGTCGAGTGGGCCCGGAACATCCCCTTCTTCCCCGACCTGCAGATCACGGACCAGGTGGCCCTGCTTCGCCTCACCTGGAGCGAGCTGTTTGTGTTGAATGCGGCGCAGTGCTCCATGCCCCTCCACGTCGCCCCGCTCCTGGCCGCCGCCGGCCTGCATGCTTCGCCCATGTCCGCCGACCGGGTGGTCGCCTTTATGGACCACATACGGATCTTCCAAGAGCAAGTGGAGAAGCTCAAGGCGCTGCACGTTGACTCAGCCGAGTACAGCTGCCTCAAGGCCATAGTCCTGTTCACCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000185551-NR2F2:NM_001145157:1
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.439 A=NA C2=0.088
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0010425=Hormone_recep=PU(67.3=77.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCAGAATGCTACATCCCGCC
R:
GCCAGTTCGCAAATGTTCTCG
Band lengths:
301-519
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)