GgaINT0028629 @ galGal3
Intron Retention
Description
NA
Coordinates
chr10:22201512-22202023:+
Coord C1 exon
chr10:22201512-22201606
Coord A exon
chr10:22201607-22201686
Coord C2 exon
chr10:22201687-22202023
Length
80 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
3' ss Seq
TCCCCACCTCTCTCCCGCAGCCT
3' ss Score
10.85
Exon sequences
Seq C1 exon
GCTGTGGGCTCAGGACATCGAAGGTGCCGAGACAGAGCGGCTCTGCCAGCCAGCCAACGTGTCCCAGCCCCGGCCCCGCGTCCTCCTGCCTCCAG
Seq A exon
GTGAGATCCTGCTCGTCCTCCCCAGCACGTGCAGTGCCGGGTCCCGCAGCCTCACTGACATCCCCACCTCTCTCCCGCAG
Seq C2 exon
CCTCGGGCACCCCGTGCCAGCGGATCCAGCTGCCACCCAACGCGGTGCAGCCGCTGCCGTGCCGGCTGCTTTCCAACCTGGCGTCGCGGCGCTGGCTGCACAACGGGACCCCCGTCAATGCCTCCTACCTGGTGCTGCCCGAGGGGGCTCTCATCCTGGTGGGCAGCCCGGAGCGCGCGGGCACATATGAGTGCTGGTCACTGGAGGAGGGCTTCCGCAAGCTGATGGCCAGCTACTGCGTGGCTGTGCAGGAGCCCGGCGGGAGGGGCTTCACCGCGCCGGAGACCGTCAGCACCTCGCGGAGCACTTCGGCCGTGGGCAGCATCGCGGCGCGGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008297:ENSGALT00000013511:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.394 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF0143720=PSI=PD(29.6=48.5)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCAGGACATCGAAGGTGC
R:
GACGCCAGGTTGGAAAGCAG
Band lengths:
173-253
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]