GgaINT0028629 @ galGal4
Intron Retention
Gene
ENSGALG00000008297 | SEMA4B
Description
sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B [Source:HGNC Symbol;Acc:HGNC:10730]
Coordinates
chr10:19534551-19535987:+
Coord C1 exon
chr10:19534551-19534645
Coord A exon
chr10:19534646-19534725
Coord C2 exon
chr10:19534726-19535987
Length
80 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
3' ss Seq
TCCCCACCTCTCTCCCGCAGCCT
3' ss Score
10.85
Exon sequences
Seq C1 exon
GCTGTGGGCTCAGGACATCGAAGGTGCCGAGACAGAGCGGCTCTGCCAGCCAGCCAACGTGTCCCAGCCCCGGCCCCGCGTCCTCCTGCCTCCAG
Seq A exon
GTGAGATCCTGCTCGTCCTCCCCAGCACGTGCAGTGCCGGGTCCCGCAGCCTCACTGACATCCCCACCTCTCTCCCGCAG
Seq C2 exon
CCTCGGGCACCCCGTGCCAGCGGATCCAGCTGCCACCCAACGCGGTGCAGCCGCTGCCGTGCCGGCTGCTTTCCAACCTGGCGTCGCGGCGCTGGCTGCACAACGGGACCCCCGTCAATGCCTCCTACCTGGTGCTGCCCGAGGGGGCTCTCATCCTGGTGGGCAGCCCGGAGCGCGCGGGCACATATGAGTGCTGGTCACTGGAGGAGGGCTTCCGCAAGCTGATGGCCAGCTACTGCGTGGCTGTGCAGGAGCCCGGCGGGAGGGGCTTCACCGCGCCGGAGACCGTCAGCACCTCGCGGAGCACTTCGGCCGTGGGCAGCATCGCGGCGCGGCTGGACGGCAAGACCTACTGGACCGAGTTCCTGGTGATGTCCGGGCTGTTCGCCGCCGCCATGCTCGTGCTGATCCTCTTCCTCCTGCACCGCCACTGCGACGGCGTGAAGGCGCTGGTGGAGCCCGGGGACGCCGGCCGGCACCAGAAGGCGCCCCGTAAGCCGGTGGAGAGCCTGCCCCTGAACGGCAGCAACCTGCCCAATGCCGCGCCCGAGCACAAGGGCTACCAGGCGCTGCAGGACAACTACATCGTCAGCACCCCCGTGCATGAGCCGCCGGGCACCACGCGTGCCTTCTCCGAGTCGGAGAAGCGGCCCCTCCACGTGCGGGACAGCTTTGTGGAGGTGTCCCCCGCCTGCCAAAGACCCCGCGTGCGCCTGGGCTCCGAGATCCAGGACTCGGTGGTGTGAGGGGACGGACAGCCTTCGCGCACCACCTCTGCTCTGCTGAGCCTCGCCGGCTGGGATCGGTGTTCGTCTGTGTGTGCATGCCGGGAGCCCGGCCCCGCCGCGCCGCCCACCCTGGTTGGGGGGGGAGGAGGGTCCTGGGCACCGCCTCGGGATGGGGCCGGCAGAGGGTACCGCACGCCTTGCAGGGATGGTTGGACTTTCCCCATCCCCGCGCAGGCACAGCCCCATCTATGCAGAGGGCTGGGGGCGGCCGCGGCCCCCTCGTGCCCCGACTCACTGTGACATCCCATTGGGGGCCCGGAGCTGTGTGTACAGCCGGGGGGTGCTGGTGCGTGGTGGCCCCGTGGATGTGGTGTGTGTCTGTGCTTGGTTTGTTTTTAATACGTTGAAAATGTGAATTGTGTCCTGGGGAGGGAGCAGACAGCGGTGCTCACCCTCTGCCAGGATGGAGCTCCATGCTGCGTGTCTCGTGTCCCCAGTGTGTGTGTGCAGAAACGTCTGTGGTTTTTATCTAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008297:ENSGALT00000013511:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.212 A=NA C2=0.258
Domain overlap (PFAM):
C1:
PF0143720=PSI=PD(29.6=48.5)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCAGGACATCGAAGGTGC
R:
GACGCCAGGTTGGAAAGCAG
Band lengths:
173-253
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]