GgaINT0029265 @ galGal3
Intron Retention
Description
NA
Coordinates
chr10:10095714-10096554:+
Coord C1 exon
chr10:10095714-10095870
Coord A exon
chr10:10095871-10096410
Coord C2 exon
chr10:10096411-10096554
Length
540 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAAC
5' ss Score
7.2
3' ss Seq
GCAAGTTCATAATGTTGTAGGCT
3' ss Score
2.96
Exon sequences
Seq C1 exon
AAACGGCAAGAATCAGTCTATTATAGTCAGCGGAGAATCAGGAGCTGGAAAGACTGTGTCTGCAAGATACACTATGAGATACTTTGCCACCGTGAGTAAGTCGAGCAGCAATGCACACGTGGAGGATAAAGTTCTGGCATCCAATCCAATCACTGAG
Seq A exon
GTAAACTTCAGAGAGCAGCTGTCAGATCTGTGCTTATCGAGGAGAGGATTCCAAGAGCTGCTGAGCACCTCCGTTTGAAATCACGAGGGGCAATTTAGTAGCTGACTTAGATACCTACGTTAGAAATTGAGCCTTTGAATGTGGGAAGAGATGGTTGGGTCAGGAGCACCGACGTTCTGCCCAATCTGCCAGCAGCCCTCTGCAGGCACTGGGATGCAAAAGTTTGATCTGACCACGTCCTGTTAAGTAGGTGGTAGCAGAAAAACATCAACAACTTGTTCGTTTTTCTTAGTTGGAGTAGAAAATGGTTCAGGTGGGAGAATGCATTTCCAATTCTCTATGTTTACATACCATTGTACTCTTTGTCTTGAGACTTATTTTCACACGTGGGCCTTACAGTCCCGATCTCACAGCTGAATGCTGAGGTTGGTTCTCGAGGAACTAAAGATTTCAGCAACTTGTGGTCGAGTCACGTTTTGAGAGATTTATTTGTATGCAATACACGAGCAAAACAAGCTCTGCAAGTTCATAATGTTGTAG
Seq C2 exon
GCTGTTGGCAATGCAAAGACCACGCGGAATGATAACAGCAGTCGGTTTGGAAAATACACTGAAATCAGCTTTGATCAGAGGTATCGAATCATTGGAGCCAACATGAGAACGTATCTGCTTGAGAAATCCAGAGTTGTCTTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004641:ENSGALT00000007393:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.219
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(24.8=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(22.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGGCAAGAATCAGTCTATTATAGT
R:
AGACAACTCTGGATTTCTCAAGCA
Band lengths:
294-834
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]