HsaINT0108867 @ hg38
Intron Retention
Gene
ENSG00000128833 | MYO5C
Description
myosin VC [Source:HGNC Symbol;Acc:HGNC:7604]
Coordinates
chr15:52272580-52275718:-
Coord C1 exon
chr15:52275562-52275718
Coord A exon
chr15:52272724-52275561
Coord C2 exon
chr15:52272580-52272723
Length
2838 bp
Sequences
Splice sites
5' ss Seq
GAGGTGCGT
5' ss Score
8.42
3' ss Seq
TAGAGTCTTATTTTTTTTAGGCC
3' ss Score
5.84
Exon sequences
Seq C1 exon
AAACAACAGAAACCAGTCCATAATTGTAAGTGGGGAGTCAGGTGCTGGAAAGACAGTGTCGGCTCGCTATGCCATGAGGTACTTTGCCACCGTCAGCAAATCGGGCAGCAACGCTCACGTGGAAGACAAGGTCCTGGCATCCAATCCCATCACCGAG
Seq A exon
GTGCGTACCACTGCGGAAGGCAGCTGGGTGTTGGTGATGGAAATGGGGGTTGGTTGGTTTGTGTGCTCTCCTGGCTAATTCAAGTTCCCACCCTTTAAAGACTAAAGAAGTGAGGGCAGGAAAGACCCGGGAAGCCTATTTGCTGGTGGGATTTGAAGGAGATGGGGGCAGAATTGTTACTTTCAAGGCTCTCTTCTGCTCTACCTGCTGGGCTGGAAATCTACCATCAGACTCCAGGAGTCCTCTGTTTACATTTACATCCCAGGGGAAACCAAACATCACTGGTACACTGAAATCACTGGTGTTCTCCACCCAGCTGGCATCAGCATTCATGAGCTGATTGTTAAAATATTCAGGAATTTTGCAAGCTGATTGATAAACCTTTGGTAGTTTGACATCAGTCAGGGGAGAAGTATTTATACCTTCTGCCTTGGCAGAGGCCACATGTCAAGACTCTTCCTCCTGCCCTCCCCAAGAGCCAGTTCATCAGCACACTACTGACTGGGACAGAGAGTGGGCAAGGCCAACCGTGACGGTGCCCAGGGGGGTGAGGAGACAGCCCTCAAGGAAGAAGAGGCACCCAAAAGGCACAGAGGAGGGTCCTGCAAGCCAACTCCAGCTGCCCCGCAAAATGGGAAGAGGATTGATTTGAATTTATTTGGAAGCAAAGCAAAAAATTAAGAATATTAGACTACTAGACCTCTTCTCCCTGTTTTCTCAAATCAAAATCCTCAATGAATATTTATCAGACAATCTACTCTGTTGAAGTCACTGCTTAGCTAATGTGGGAAGTGATGGAAAAGAATAAGACCCAATCTCCAAGTGTAAGATTCTTCTAACCTAATGTAAGAATATTTTAAAATTAAATAGAAACATATGTCGGGGGGGGGGTACTAAGAAACACTGCAAAGCTCATAATTCAGAGGCATAGGCTTACTTAGAAACATAAATTACAATCCAAGATACCAATAGAAAAGTTATCAAGGCTGGGTGCGGTGGCTCACATCTATAATCCTGCACTTTGGGAGGCTGAGGTGGGTGGATTGCTTGAGCTCAGAAGTTCCAGACCAGCCTGGGCAACATGATGAAACCCCATCTCTACCAAAAATACAAAAAATTAGCCAGGTATAGTGGCACATGTCTGTAGTCCCAGCTACTCAAGAGGCTGAGGTAGGAAGATTGCTTGAGTCAGGAGGTGGAGGTTGCAGTGAGCCAAGATTGCACCACTGCACTCCAGCCTGGATGACAGAGCAGGACCCCATCTCAAAATAAAAGTTATCAAGAGCCAGTGCCAAGTTAAATGCCCAGTGGATAATTTTGTGTAAATATTTAGGGTTTGTCTCCTCTACTAGACTGCACACTCCATGAAGGCGGGACTGTATCTATTTGGTTTACCTTTGTTTACCGAGCGCATGGCACATAGTAGGTGCTCAGTAAAGACATGTTGGCAGGCAGCATGATGACCTGGGTCATCTAGAAACAGGGTGCTCAGGAGAGGGTGGGGAGGGGCAGAGGAGAGATGAAATTGAAGAACAGAAGTAAAAAGCAAAAATCCTGCCCAGAGAGTGTGAGGGATGGGAAGGAGCAGTTTTTTGGTTGAGTGGAAAGGTTGAGTAGGGAAGCAGTAAGGAGTAGGGATTGGAATAAAGGTTGGATGAAAGATGTGAACTTCTAGTTGAGCATCATAGGTATTTGGGGCCTGAATGAGTTGAGGCACCTCATATTCTCTCATTTAATCCTCCCTACTCTGTAAGTGTTCTGGTCAGTCTGGGCTGCTATTATAATAATAAATATAATGTACTTTAGTATAATATACTTTAGTGTCATTGACCAGGTGGCTTATAAACAACAGAAATTTATTTCTCGCAATTCTGGAGGCTGGAAGTCCAAGATCAGGGGGCTAGCAGGGGTCAGGTTCTAGAGAGGCTTCTCTTCTGGGTTGCAGACTGCTGTCTTCTCACGGTACCCTTACATGGCAGAAAGAGAGCAAGAGAGGTCTCTGGGATCCCTATTATGTAGGCATTAAAATCCCACTCCCAGGGGCTCCACCCTCGTGACATCATTACTTCCCAAAGGCCCACCTTATGATACCAATACATAGGGTTAGGATTTCAGCATGAAGATTTTGAGAGGACACAAACATTCAGTCCATAACAGTGAGTTGCTTATGATTCTCATATTACAGATAGGGAAATTAAGACCTGGAAAGATGAATTAACTTTTTTGTTTGTCTGTTTTTGAGACAGGGTCTCGCTAAGTTACCCAGGCTGGAGTGCGGTGGTGCAATCATAGCTCACTGCAGCCTCCAACTCCTGGGCTCCAGCAATCCTCCCATCTCAGCTTTCTGAGTAGCTAGGACTACAGGCACACACCACCATGCCTGTCTAATTTTTTTTTTATGTTTTGTAGAGACGGGGGTCTCACTGTGTTGCCTCATCTGGTCTCAAACTCCTGGCCTCAAGTGAATTTCTTGCCTCAGCCTCCTGAAGTGCTGGGATTACAGGCGTGAGCCGCTGCACCTAGCCAGTGAATTAACTTTTAAGACATTACACAGATAGCAAAGATAGAACCCAGGACCCTGAAACATCAGAACCTGTGCTCTTTCTGGTCCTCCCCAGTATCTGCCAGTGGGACCAAGGAGAACCTTGAGCAGCAGGCTCATGTTCTGATTTGTCATGTTCCCTGCCAGCGTGGGGTTGCTTTCTTTCCCCAGACTTCCCTCTGCCAATCAGACCTTCCCCTAGGGTACAGGATTGCCTTTTACTAAAAACCCCTCCAATAATTTTGAGGCAAAAATCTTTTAATGTTGTTATTTCAATAGAGTCTTATTTTTTTTAG
Seq C2 exon
GCCGTTGGAAATGCCAAGACCACCCGCAATGACAATAGTAGTCGGTTTGGGAAATACACAGAAATCAGTTTTGATGAACAAAATCAAATTATAGGAGCCAACATGAGCACTTACCTCCTGGAGAAATCCAGAGTTGTCTTTCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000128833:ENST00000261839:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.112 A=NA C2=0.316
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(10.6=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(13.1=100)
Main Inclusion Isoform:
NA

Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development