GgaINT0029537 @ galGal3
Intron Retention
Description
NA
Coordinates
chr10:10111687-10112714:+
Coord C1 exon
chr10:10111687-10111841
Coord A exon
chr10:10111842-10112624
Coord C2 exon
chr10:10112625-10112714
Length
783 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGGA
5' ss Score
9.45
3' ss Seq
GATTGCTTTATCATTTTCAGGAA
3' ss Score
9.52
Exon sequences
Seq C1 exon
ATTTAAAGCCACGTGGAGTTGTAGTCAATATGATACCCGGCCTTCCAGCTCACATCCTATTCATGTGTGTGAGGTATGCAGATTATCTGAACGATGCTGACATGCTGAAATCTTTCATAAATGTAACCATTGATGGTATCAAACAAGTTGTTAAG
Seq A exon
GTAGGAATTATATTTGGCTGTACTTTACTTTTTGATTTTCATGTCAAGTTTATAAGATGCATGCATAGTACCTGGGAAATGCTGATACTTGCATTTGCTAGTATTCCTATAGCAAATAGTTGTTATTATTAGTGGCACTCCTTTTGGTGTTATTAGTAGTATCCCTATGAAGCCTACGGGTGAGGTTCTCCTGTGCTGAATATGTGAACATCTTCATCCAAATTCAGATATGTGAATGCTTTGTTGTATATTTGTGATGCAGTAGGACATCAGGTGTGCTTGGTAGGAATGCAGTTGAATTTGTTGTGTAGGAAATGCTTGTATCTCGTTCACAAATTTATACCACATTTTACCCATAAGAAAAGCTTGTGCGTGTATATCTGATAAAAAGAAGACATGCTTCAGCAAAGTTAGAATTGTGTTTATATGTAGTTCAGTTTCATTTCTGTATGAACATTGGTCACCCTTTGGCAGGAAGGCCTCCAATACACTACAGTGCTACAGGTAGAAATGTGTAACACTGGTTCAGACTGATGTATTTAGGCTGTCCCTTATATAGACTTAAACAGTATTTAATGAGTTAAAGAGGGGTCTTTGCTATATATTCAATAGCCTGAAAAAATCCCAGAATGATTTGTACAGCTTGCACATTACAGGTGCTATTTGTTCCTTCTTCTGTAGATAGGTGGTATTATTGCTAATTCTGTGATTTTCAGCTTCAGTTTTGAAATGAAATTAACTTCATGAGACAAAGCCAATATAAGATTGCTTTATCATTTTCAG
Seq C2 exon
GAAAACTCAGAAGATTTTGAGATGTTGTCTTTTTGGCTTTCCAATACATACTATTTCCTTAACTGTTTGAAGCAGTACAGTGGGGAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000023524:ENSGALT00000039054:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCCACGTGGAGTTGTAGTCA
R:
TCTTCCCCACTGTACTGCTTCA
Band lengths:
238-1021
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]