GgaINT0029610 @ galGal3
Intron Retention
Description
NA
Coordinates
chr10:1641844-1642216:+
Coord C1 exon
chr10:1641844-1642021
Coord A exon
chr10:1642022-1642095
Coord C2 exon
chr10:1642096-1642216
Length
74 bp
Sequences
Splice sites
5' ss Seq
CGGGTAAGG
5' ss Score
10.17
3' ss Seq
GATGTCTGACCTCCATTTAGGTG
3' ss Score
8.86
Exon sequences
Seq C1 exon
ATGACTGGAGGACCGAGAGGCTCTCCAATGGTGTCCAGCTGGGGGAAAGCCTGCATCTCCAGGCTGATGTCATGGCTGGGAACCACATACCACTGAGGCTGTTTGTGGATGACTGCGTGGCTACTCTGAGCCCTGACAGGAACTCCTCTCCCCGATATGCCCTGATTGACCTCAGCGG
Seq A exon
GTAAGGGGATGCCCTGGTCTGTGGGGTAATGCTGCAGATAGCTGGGGCCACCCTGATGTCTGACCTCCATTTAG
Seq C2 exon
GTGCTTGGTGGATGGGAGAACAGATGATGCCACTTCAGCCTTCATATCTCCACGGCCAAGGCAGGAAACACTGCAGTTCATGGTTGATGCATTCAAGTTTGCAGGAGATGACAGAAACTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001721:ENSGALT00000002639:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.098
Domain overlap (PFAM):
C1:
PF0010018=Zona_pellucida=FE(22.7=100)
A:
NA
C2:
PF0010018=Zona_pellucida=FE(15.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCACATACCACTGAGGCTGT
R:
GAACTGCAGTGTTTCCTGCCT
Band lengths:
176-250
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]