HsaINT0188695 @ hg19
Intron Retention
Gene
ENSG00000188372 | ZP3
Description
zona pellucida glycoprotein 3 (sperm receptor) [Source:HGNC Symbol;Acc:13189]
Coordinates
chr7:76062787-76063472:+
Coord C1 exon
chr7:76062787-76062964
Coord A exon
chr7:76062965-76063354
Coord C2 exon
chr7:76063355-76063472
Length
390 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGC
5' ss Score
7.23
3' ss Seq
CCGTTCTGTTTTCTTCCAAGCTG
3' ss Score
7.62
Exon sequences
Seq C1 exon
AGAACTGGAACGCTGAGAAGAGGTCCCCCACCTTCCACCTGGGAGATGCAGCCCACCTCCAGGCAGAAATCCACACTGGCAGCCACGTGCCACTGCGGTTGTTTGTGGACCACTGCGTGGCCACACCGACACCAGACCAGAATGCCTCCCCTTATCACACCATCGTGGACTTCCATGG
Seq A exon
GTGAGCACTGGGCTCCCTGCCTAGAGAACCTTCCTAGCAAAATGACCCTAAAGCCACCTGTTTGGCTTTTTGAGACAGTGTCACTCTGTAACCCAGGCTGGAATACAGAGGCTTGATCTCTGCCCTCTGCAACCTCTGCCTCCCAGGTTTAAGTGATTCTCCTGCCTCAGCCCCCCAAGTAGCTGAGATTACAGGTGCCCATCACCATGCCTGGCTAATTTTTGTATTTTTAGTAGAGACAAGGTTTCACCATGTTTGCCAGGCTAGTCTCGAACTCCTGACCTCAAGTGATCCACCCACCTTGGCCTCCCAAAGTGCTGGGATTATGGGCGTGAGCCACGGTGCCCGGCCCACCTGTCTGGCTTTAATACCGTTCTGTTTTCTTCCAAG
Seq C2 exon
CTGTCTTGTCGACGGTCTCACTGATGCCTCTTCTGCATTCAAAGTTCCTCGACCCGGGCCAGATACACTCCAGTTCACAGTGGATGTCTTCCACTTTGCTAATGACTCCAGAAACATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000188372-ZP3:NM_001110354:4
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.019 A=NA C2=0.033
Domain overlap (PFAM):
C1:
PF0010018=Zona_pellucida=PU(47.2=98.3)
A:
NA
C2:
PF0010018=Zona_pellucida=FE(15.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACTGGAACGCTGAGAAGAGG
R:
CATGTTTCTGGAGTCATTAGCAA
Band lengths:
294-684
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)