Special

GgaINT0029950 @ galGal3

Intron Retention

Gene
ENSGALG00000004624 | MYO5A_CHICK
Description
NA
Coordinates
chr10:10037766-10040485:+
Coord C1 exon
chr10:10037766-10037891
Coord A exon
chr10:10037892-10040401
Coord C2 exon
chr10:10040402-10040485
Length
2510 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
3' ss Seq
TTTTTAATGATCCTTTTCAGGTG
3' ss Score
10.53
Exon sequences
Seq C1 exon
ATGCCAAAAGGCTCGGATGACACTTGGGCCCAAAAACTGTACAATACTCATTTGAATAAATGTGCCCTCTTTGAAAAACCACGTTTATCCAATAAGGCTTTTATCATCAAACACTTTGCTGACAAG
Seq A exon
GTAAGGAGTTTTCTGCTGGTTACTTCTTTCCAAAGCTGTGGGGCGTGAGGGGAGGGGAAGGCTAAGGCAGCTTCTGCCCCAGGGAGTGGGGCTATGGTGGTCCCAGCCTGGGGGAAGCAGGTGTCCAAGAACTGCTCAGATGTGCATGGGACAGCTGCTGGGCTGCCCCACCGCCTGGTGAAACCTGTCTGCAGCTTGGATGCAAAACTGAGGCTGTGGATTGACAGATGTTTCTGTATCTCATGCCCGTGCGTGAAGTTATCGGCTGTGTGTGCTTGTTACAGCACCGTTCAATTTACTGGAAGTTTCAGCTGATTGCTTTCTCCCTCAGTTCAGTCAGGGTGAGCTTCAGCTGGCGTGGTTTCAACGGCAGTTCTTGGCTAATGCTGTTCAGTTTGATGAGGTGGGGTAGGGAGTGGTCAGGAAGCATTCCCAGTGGCCACGAGGCAGAAGGAACAAGCTGAGGGGCTGACCGGTGGACAGCAGCCTAATTTTCTGCTTGGCTTCTTGCAAAACGTGTGCCCGTCTCTACGCCAGCTCCGAAGAAAGTTGAGCTGGCAGCTGTGCAGAGCCAGGAAGACAAACAAGAGCTCCTGACTCCTATCACATGCTGTAACCACTAACCATCCTTTGTTCAAAATGTGCATTTCCGAGTCACAACATAAATTCCAATTACATTGGGCAAAACAGAAAATCATGCATCTCTCCATAGCTTTAGTTAAAGAGCAACAATGAATGAATGCCAGTTTTGCTGCAAACAGGTGACAAGCTAACAACACACCCTGCTGTTATTGCTGGAGTGGAATGTGCTCTTCCCACCTTTTGCCTCTTCTGGTCAGTGAGCAGCTATTTTTGGCAGGCTCAGTGGAGTGCATGTGCTGCCCAGCTCTGACAGCACACAACCCAGCTGAGCTGAAAGAAAAAAGATAAAATCCAGTTTAAGATACTTGTCCTGTTAAATGAAGAAGCTGGTTCAGAATTTTGTCAGCTTTGTCAAAAAACTGTGGCCACAAGCTTGGGCAAGCTCTGGAATTCTTATCATAGGTCTGGATGTGCTGACTCGAGAGGCTGCAGTTCTTTATTTGCCTCCTCTTGATTTCTCAAAGGTTCTTCAGATTACACACAGAGGAGAGATCCCATTCTTGTTGCTTCTAGTGTTACCTTAATGAAAGCCCTGAGAGCTCTGTAGCTGTATAGATCTGTGAGTTCTGTTTCATTTGCTACATGAGAGAACAAGAAGGATTTAATTCTCGTTTCTTATACTGTTCAATAGTCTAAAGTTGGATGTTTGAAAATTGAATGTTCCTATGCCTGCTCTGGGCATCACAGTCCAAAGAAAGCTGAAAGGAGCTCCAGGCAGGCACTGACTGAGCTGTAAGCTCCAGTGCGTTGTCTGTGCCAAGCAGCATGTGCTTTCCTGTGTGCTTACGTGAGGGCATACAGACATCTTGAAAAAATAAGACTGTAGCTGACATGCAGGGAGCTGTGTGCCTTGTCGTCATCTTTTCTGGGAGAAAGCAGAGATCCTGCTGCCCTCTCGTGGCACCATCTCCGCAGTGAGAACGTAAGCGGTACCTGAAATATCGAGCAGAGTGGGCTTTGAGTTACGGGCAGACCTTGGAAAATCCCCTTGTCTTCCCCCTAGGAATATAGGAGATGTTAGCGGGGGGATAGCGGCGTTGTGTAAGAATTACTAAGTGGCAGCACTGGAAGATGTCTGCTGATGGACGTCAGTCTGTCTGCTCTGAAAGAACAGAATCGGTGTAAGGGCTCACTCTTGTGTTTTGTAGCCTGCACTTCTGCTGAGATGAAATCAGAACAAGACCTGAAAGCAGAGCTGCCATCCTTACACTAACTGTCTTTGAATTCTAAGGTGTAAACTTGTGACGGGAGCTTTTAGTTTTTGTTCAGCCTGGAATTAGGACTGTGGAATTTTTATGTGAAGCTCCGGCCATTCTTTGATCAAGAATCTGTGGCCCTGGGATAGGGGATCACCATGTGTTGTCCCAGTGTGCTGTCACAACAGGCAGACTTACTGCTTCTCAAACAAATAGTCTTTCTGAGTACAAATGAGGCATTTTCCTAACAACTTGCAGGCAGATTTACTTATTGCCCGTTGGCTAATGAGATGAGATGTTCTGTTCTCAGTTGCACCCGGGTTTCTCACAATTTTGCAGCCCTGATGACTTTGGTATAGGAGATGCTTAATACAAACTTCGATTCCTCACCTTTACAGTAACCATTCAGTCATGCTGTCTTACCACAGGCACCTCTCTGCAGAGATATATCAGGTCTACTGCAATGACAGTATTCATCTCTACACGTTTTGATGTTTTACAGTTACTGGAAAGCACTGTCTCTGAGCAAAATCTATATTTAAGAAAGATGCAGCTGGGAGCTGATATTTTCAACACCCAGAAGAATTATATTTTAATGTGACTGTTATAGCTGGTGGATTCTGTGCTACTTATTACATGCTTTTAATACTTTTTTTTAATGATCCTTTTCAG
Seq C2 exon
GTGGAATATCAGTGTGAAGGCTTTCTGGAAAAGAATAAGGATACAGTTTATGAAGAGCAAATTAAGGTCCTAAAATCAAGTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004624:ENSGALT00000039066:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact

No protein impact description available

No structure available
Features
Disorder rate (Iupred):
  C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):

C1:
PF0006316=Myosin_head=FE(6.0=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(4.0=100)


Main Inclusion Isoform:
NA


Main Skipping Isoform:


Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]