BtaINT0098151 @ bosTau6
Intron Retention
Gene
ENSBTAG00000006489 | MYO5A
Description
myosin VA (heavy chain 12, myoxin) [Source:HGNC Symbol;Acc:HGNC:7602]
Coordinates
chr10:58075798-58077257:+
Coord C1 exon
chr10:58075798-58075923
Coord A exon
chr10:58075924-58077173
Coord C2 exon
chr10:58077174-58077257
Length
1250 bp
Sequences
Splice sites
5' ss Seq
AAAGTAAGG
5' ss Score
6.6
3' ss Seq
ACTTTCCAATGTGTTTTCAGGTG
3' ss Score
10.89
Exon sequences
Seq C1 exon
ATGCCTAAAGGTACAGATGACACTTGGGCTCAAAAATTGTACAACACACATTTGAACAAATGTGCACTATTTGAGAAGCCCCGCCTATCAAACAAAGCTTTCATCATCCAGCATTTTGCTGACAAA
Seq A exon
GTAAGGAAGCTTTATTATCTCTTTTCTATTTGAATACTTAAGTTCAAAGAGGAAAAAAATCAATAGTCGATAGCAGTTTTTTCTTTGCTGAGCTTTCATTCTTTAGCTCATTTTAGGAAAAGTAAGCTTAATTGTTGGCTTATTGGTTTAACCTAAATGGAATTATATTATGAAATAAGTGTATCTATAATTCTGAAATCCAGGAAACTCTGAAATACACAAGTATTTTCATAATTCATTTAGTGGCTAAACCTGATCTTTGACCTGAAGTAACATGAGGTTATTTATAGTCTTTATTTATCCCAGTTAGGTGGATATTTATATATTTCAGTGTAGAAATATTAATATGTTTGATTACAGATTGCTGCTTCAGATCTACTTAAAGATTCTGGATAGTGACCCCAGAGGTTTCAGAAAAGAAATTGTGGACGATTGTGGCTCTCTGAGATTGATTGAGTGGGTCCCTGCTAATAAGGCATGCAGACCTGCTGCTTCAGAGGTTCTAGAGTCTACTCAGAACATCTGGAGCTGTGACACTAGTTTATATTTCAAGGAGGTTGTGGGGTAGGCATCTGATAAGCTTCCCATGGTCCCTGTCAGGAACTGAGGGTTTTCAGAATCTGTCCTACGTCTAGCTGGAGATCTTTGGATGGCTTCAGGGCCATCTAAGGGCTTTGTAGTACAGGCTGGGGACCCTTGAGTGGTAGATAGCTGAAGTCTTTTAGGAACAGGGAGAGTCCAGTCTCATGTAGTCCTCCTACCAGCTCATATGGTATTTACCCAGCCTCCACCTCTGTCCGTGATCATCACTTCAGCTTTCTGCCAGATAGCTGTTTGTTCCTTCTGATCCTCTCTCTCTCTTCAGTCTCTTCTTCCCCAAAGGAGACTTTCCCCTATGGAAAGGTGAACCAGGTTTGGAAGAGATACAGTGGTTGGCCTTGGGGGGCTTATGAAGCTGTTATGAAGAAGAACAGCTTCTTATGAAGCTACGCATGAATTGGGATCATCTTTTAGATCACATTTAATCACCACTGCCATTGTTCTCTAGGAAAAGCAGTATTTGAGAGTTTTACTCTAGAGTTAACATGCTTCTTACCAAGAATGATACTAGTTTCTTAGAATAAAACTAATAACACTTCACTGAGAGCCCATCATATGGCCTGGGCCTAATACTTATTTTTGTTGTTGATGATAAATTGTATCTATTCAAAGCTTTTATTAACTAAGGAGACTTTCCAATGTGTTTTCAG
Seq C2 exon
GTGGAATACCAGTGTGAAGGCTTTCTGGAAAAGAATAAAGACACCGTTTTTGAAGAACAAATTAAAGTTCTTAAATCAAGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006489:ENSBTAT00000008516:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(6.0=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(4.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGCCTAAAGGTACAGATGACACT
R:
TAATTTGTTCTTCAAAAACGGTGTCT
Band lengths:
190-1440
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development