RnoINT0097219 @ rn6
Intron Retention
Gene
ENSRNOG00000058866 | Myo5a
Description
myosin VA [Source:RGD Symbol;Acc:3143]
Coordinates
chr8:82077043-82079349:+
Coord C1 exon
chr8:82077043-82077168
Coord A exon
chr8:82077169-82079265
Coord C2 exon
chr8:82079266-82079349
Length
2097 bp
Sequences
Splice sites
5' ss Seq
AAAGTAAGG
5' ss Score
6.6
3' ss Seq
ATTTTTTCATGTGATTTCAGGTG
3' ss Score
8.14
Exon sequences
Seq C1 exon
ATGCCTAAAGGTACCGATGACACATGGGCCCAAAAACTATACAACACACATTTGAACAAATGTGCTCTCTTTGAGAAGCCCCGCATGTCAAACAAAGCTTTCATCATCAAACATTTTGCTGACAAA
Seq A exon
GTAAGGAAACTTTTGTCTTTTTTCCTTTTTTATATTTTACATTGAATTATAATAAAAGTCAGTAGTCAAGTATTAGGTTTTTTTTTATTTTTTGGTTAACTTGAGTTGGATTACATATTAAATAAATATGGGTCAAAAGTCTTTGTCTGAAATTTTGAAATCCAAGAAACTGAAAACTAAAAGTGCTTTCATAACTTGTTTAGCACCCAAGCCTGAACTAACATGAGATCTATTCATAATTTTTAGCTCAATTGATGTGGGTACTTATGTGCTTAAGTATGAAAATATTAATGTAATTTATGGTATAAATAACTTTATTAAACTTTTTGAAAGTACCAAAATGTGTATATATCCATACTACTTCTCTAAGTACACGCATATTCTCAAGGCTCACAGGCTTCATCAGAGCCTGGATTTTGTCTCCTGTGAAAACATGGTGATACATTCTTCACAAGTTCCATAGCTCACTTAGCAGATCGAGGATTATGTGACTAGTTCCCACTCCAAGGACGTTATGGGACAGGCTGTGTTGTGAGATTTCTGAAGGCCTCTTTATGAATAGAGTTTCCTGATTGTCTAGTTCTGGCTCGAAACCTTTTCGTGACTAAGGTGACCTAAGGAGAATAGGGTGAGGAACCCCTTGAGTGGGAAATGGCTGAAGGTGTGGGGCTTTAGAAGAAAATGAGTTCTCAAGTAGTCCCACTTTACCAAATTATCCAGTATTTGCTCACCTTTTCCCTCTGTCCCTCAGCTCCTCACGAGTTCCCAGCCTCTCTTCACTTAGTCTTTCCCCTCCTTAGAGCAGTGCCTCTCACTCTTCCTAATGCCGCGGGCCTTTACCATGTTCTTCATGTTATGCTGACCTTAACCATACAATTATTTTCATTCCTACTTTATAACTGTAACTTTGCTACTGTTATGAATCCTAATGTAAGTATCTGTGTTTTCCAATGGTCTTAGGTGACCCCTGGAAAAGGATCATTCCACACCCAAAGGAGTCTCGACCACAGGTTGAAAAACACTGCCTCAGAGGAACACTTCTGCTTGTGCAGATGGTTCATTAGCTTAGACTGTACACTGGGTCAGCCTGGGAGGAGCTGTCTTTAGCCATGAGGGGAAAAATCAGCTTACAAGTCTGCTTACCCACGAACTAATGGAGCATTTTGATCTTAGTTTATTATCAATCACTACCACTCTTAGAAAATTGGTATTTGTCAACTTACTAGAGTTTACATATTTCTTTTTTATTCTACTGTTTTTCTTAGATTTTTTTTAAAGCTAACATATAAGGAAATAGATCTTTTGTTTTGGGGACAAGGTCTATGAACCTAAGGCTGGCCTTAAACTTACTGTGCAGCTGAGGCCAACGTTGAACTCCTAGTCCTCCTGCCTCTACCTCATATGTGCTGGAATTCTTGGAATGCACTATGGATTTCATTTTATCCTTTTTCGTACATACTCTGCTCCTATCTATCCTTGTCCTCCAGTTCTTTCCACTGCTCCTGTCCTCCTCTTGTCCCATTTCCTATCCCACAGCCCAGTTCTGCCTTAATGTCCCACGTATTCCACTACCTTTCCTTTCTTCCCATTGATAGTTCTTCTTTCTAGTTCCCCCTATATTAATATGTGTGTACACACACGCACGCGCACACAGTTGAAATGTAGGGTCCACATAAGAGAGAAGACAGGAAGTATTTGGGTTTTTGGTTTGGCATATTTCATTCAACATAATGATTTCCATGTGTATCAGTTTTCCTGAAAATGTCATGATTTCATTTTTATTGTGGCTGAATAAAATTCCATTGTATGTATATACCATGTGTTCTTTATCTACTCATCTGCTGATGGACATAGAGACTGGTCCCACCTCTTAGCTGTCATGATTAGTGTAACAATAAGCTTGTGTGTACAAGTAGCTCTTGTGTTAGGAATTGAGTACTTTGTGTCTATCTCCCCAGGTTTACTCTAGTGAATTACCACACCTCTCCCTGGAAATAGCATTGATCTAGAGTCTGGGCAAATAAATATGTTTTTGTTGATGACTATATCTATTCCAAAGTGTTGTCAGTTAGGAGATATTTTTTCATGTGATTTCAG
Seq C2 exon
GTGGAGTACCAGTGTGAAGGTTTTCTTGAAAAGAATAAAGACACTGTTTTTGAAGAACAAATTAAAGTCCTTAAGTCAAGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000058866:ENSRNOT00000079535:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(6.0=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(4.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]